| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,507,260 – 16,507,374 |
| Length | 114 |
| Max. P | 0.749021 |
| Location | 16,507,260 – 16,507,374 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.62 |
| Shannon entropy | 0.53989 |
| G+C content | 0.36720 |
| Mean single sequence MFE | -25.29 |
| Consensus MFE | -8.71 |
| Energy contribution | -7.05 |
| Covariance contribution | -1.66 |
| Combinations/Pair | 1.72 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16507260 114 + 22422827 CCUAAUGUUUUAGAUGUAGUCUAUUUAAAUGAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAUC--UUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAG-CAGGAAAUUCUUUU .(((((..((((((((.....))))))))....))))).............(((((((.((.....--...((((((.((....))))))))....)).)))-)))).......... ( -26.40, z-score = -2.14, R) >droEre2.scaffold_4690 6865871 112 + 18748788 UAUGGUGUUUUAGAUGUAACCUAUUUAAAUCAAAUUAGAACUAGAACCCAGCCUGUUCAUUCUAUC--UUUCACGUUAGGGAAACCAGCG--UUCCCAAGCG-CAGGAAAUUCUUUU ..(((.(((((((.(.(((...............))).).)))))))))).(((((..........--..........((....)).((.--.......)))-)))).......... ( -22.06, z-score = -0.89, R) >droYak2.chrX 10613482 112 + 21770863 UAAAGUAUUUUACACAUAAGCUGUUUAAUUCAAAUUAGAACUAGAACCCAACCUGUUCUUUCCAAC--UUUAACGUUAGGGAAACCAGCG--UUCCCAAGAG-CAGGAAAUUCUUUU .((((.((((.............((((.(((......))).))))......(((((((((......--...((((((.((....))))))--))...)))))-)))))))).)))). ( -22.80, z-score = -2.18, R) >droSec1.super_17 330573 114 + 1527944 CCUAGUGUUUUAGAUGUAAUCCAUUUACAUCAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAAC--UUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAG-CAGGAAAUUCUUUU .(((((...((.(((((((.....))))))).)).....))))).......(((((((.((..(((--....(((((.((....))))))))))..)).)))-)))).......... ( -31.90, z-score = -4.21, R) >droSim1.chrX 12686940 114 + 17042790 CCUAGUGUUUUAGAUGUAAUCCAUUUACAUCAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAAC--UUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAG-CAGGAAAUUCUUUU .(((((...((.(((((((.....))))))).)).....))))).......(((((((.((..(((--....(((((.((....))))))))))..)).)))-)))).......... ( -31.90, z-score = -4.21, R) >droGri2.scaffold_15110 20345225 106 + 24565398 -----------UCCCACAGACUUUGAAUAAUCAAUUAUAAUAAUUACGUUUGUCGUUUGCAGCAUCCGUUUAUUGUGGAAUUAGUGUAUGCGUUUCAAACAGACGGUAAAUUGUAUC -----------...........((((....)))).....((((((.(((((((....((((((((..((((......))))..)))).))))......)))))))...))))))... ( -16.70, z-score = 0.64, R) >consensus CCUAGUGUUUUAGAUGUAAUCUAUUUAAAUCAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAAC__UUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAG_CAGGAAAUUCUUUU ..........((((((.....))))))........................((((..................((((.((....))))))...((....))..)))).......... ( -8.71 = -7.05 + -1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:50:07 2011