| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,479,090 – 16,479,210 |
| Length | 120 |
| Max. P | 0.757295 |
| Location | 16,479,090 – 16,479,210 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.32 |
| Shannon entropy | 0.08049 |
| G+C content | 0.47489 |
| Mean single sequence MFE | -36.72 |
| Consensus MFE | -34.24 |
| Energy contribution | -34.68 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16479090 120 + 22422827 AAUACGAAAUAUGGAGUGGCGGAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGCAAUUAUUAAUGAAUUGCAGCA ............((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..))))))((((((.......)))))).... ( -36.60, z-score = -1.71, R) >droEre2.scaffold_4690 6837145 116 + 18748788 ----CGAAAUACGGAGUGGCGGAACGUCAAUUGCGAAUCGCUCCGAUUGGAAUGCCGAUGGCGCAAUUAUUGGAUGAUUGCAUUGGACGGACACCCCGCAAUUAUUAAUGAAUUGCAGCA ----.......(((((((.((.((......)).))...)))))))(((((....))))).((((((((....(((((((((...((........)).)))))))))....)))))).)). ( -35.80, z-score = -1.20, R) >droYak2.chrX 10585332 116 + 21770863 ----CGAAAUGCGGAGUGGCGGAACGUCAAUGGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGCAAUUAUUAAUGAAUUGCAGCA ----.....(((((...((((...((((....((.(((((((((.(((((....)))))))))).(((....)))))))))....))))..))))))((((((.......)))))).))) ( -38.20, z-score = -1.55, R) >droSec1.super_17 302274 120 + 1527944 AAUACGAAAUACGGAGUGGCGCAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGCAAUUAUUAAUGAAUUGCAGCA ...........(((((((.(((((......)))))...)))))))(((((....)))))...((((((....(((((((((...((.(....)))..)))))))))....)))))).... ( -36.10, z-score = -1.30, R) >droSim1.chrX 12674174 120 + 17042790 AAUACGAAAUACGGAGUGGCGGAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGCAAUUAUUAAUGAAUUGCAGCA ............((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..))))))((((((.......)))))).... ( -36.90, z-score = -1.75, R) >consensus AAUACGAAAUACGGAGUGGCGGAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGCAAUUAUUAAUGAAUUGCAGCA ............((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..))))))((((((.......)))))).... (-34.24 = -34.68 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:56 2011