| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,469,938 – 16,470,033 |
| Length | 95 |
| Max. P | 0.616240 |
| Location | 16,469,938 – 16,470,033 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 63.30 |
| Shannon entropy | 0.52071 |
| G+C content | 0.37478 |
| Mean single sequence MFE | -21.34 |
| Consensus MFE | -8.95 |
| Energy contribution | -8.40 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16469938 95 - 22422827 ACGAUUCCUGAAAAGAAUCCAAUUAAAAUCAUG-------------AAUCGCCUAUCAAUCCGCCU-AAAGCAUGUUGCAAUACAUGUGCUUAAAAAGCAAAGCAAUUU .((((((.(((.................))).)-------------)))))...........((..-...((((((......))))))(((.....)))...))..... ( -16.33, z-score = -1.84, R) >droSec1.super_17 293187 109 - 1527944 ACGAUUCCUAAGAGGAAUACAAUUGAAAUCACGAUUAUUCCUGCAAAAUCCCCUAUUAAUGCGCCUAAAAGCGUGCAGCAAUGCAUGUGAUUUAAAUUCAAAGCAGUUU ...(((((.....)))))..((((.((((((((..((((.((((..(((.....)))...((((......)))))))).))))..)))))))).))))........... ( -21.20, z-score = -1.28, R) >droEre2.scaffold_4690 6828092 100 - 18748788 ---------AGCAGGAAUGCGACAGAAAUCAAUCAUAUUGCUGCAAAAUCGCUUAUAAAGGCGCCUAAAAGCAUGCAACAGUGCAUGCCAUUUAAACGUUAAGCAGUAC ---------.((((.((((.((..(....)..)).)))).))))......(((((.....(((..((((.(((((((....)))))))..))))..))))))))..... ( -26.50, z-score = -1.85, R) >consensus ACGAUUCCUAAAAGGAAUACAAUUGAAAUCAAG__UAUU_CUGCAAAAUCGCCUAUAAAUGCGCCUAAAAGCAUGCAGCAAUGCAUGUGAUUUAAAAGCAAAGCAGUUU ......................................................................(((((((....)))))))..................... ( -8.95 = -8.40 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:52 2011