Locus 14937

Sequence ID dm3.chrX
Location 16,458,925 – 16,459,021
Length 96
Max. P 0.823254
window20578

overview

Window 8

Location 16,458,925 – 16,459,021
Length 96
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 75.65
Shannon entropy 0.36945
G+C content 0.43969
Mean single sequence MFE -25.27
Consensus MFE -11.11
Energy contribution -12.67
Covariance contribution 1.56
Combinations/Pair 1.05
Mean z-score -2.58
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.81
SVM RNA-class probability 0.823254
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16458925 96 - 22422827
UACAUAAAUACACCAACAAGCAGGGCAAUGAUCCAACUCAAAGUUGAU--------------CGUCCCCUGCCAAUCGUUUAUCGGUAAUUGUUUAUCGUCGCCAUUGUC
...................((((((..((((((.(((.....))))))--------------))).))))))((((.((....((((((....))))))..)).)))).. ( -24.80, z-score =  -3.50, R)
>droYak2.chrX 10564476 92 - 21770863
----UACAUACACCAACAGGCAGAGCGAUGAUCCAACUCAAAGUUGAU--------------CGUCCCUUGCCAAUCGUUUAUCGGUAAUUGUUUAUCGUCGCCAUUGUC
----..............(((((.(.(((((((.(((.....))))))--------------))))).)))))(((.((....((((((....))))))..)).)))... ( -22.20, z-score =  -2.16, R)
>droEre2.scaffold_4690 6817101 92 - 18748788
----UACAUACACCAACAAGCAGGGCGAUGAUCCAACUCAAAGUUGAU--------------CGUCCCAUGCCAAUCGUUUAUCGGUAAUUGUUUAUCGUCGCCAUUGUC
----...............(((.((.(((((((.(((.....))))))--------------)))))).)))((((.((....((((((....))))))..)).)))).. ( -23.20, z-score =  -2.32, R)
>droAna3.scaffold_13117 5320816 109 - 5790199
-ACAAGAAAACAACAAAGCGGAGGGAUAUCGAUCAACUCAAAGUUGAUGCGAGCCAGCCGCGAGUAUCGUUUAAAUCGGUAAUCGUUUAUCGUUUAUCGUCGCCAUUGUC
-...........((((.((((..((...(((((((((.....)))))).))).))..))))(.((..((..((((.((((((....)))))))))).))..))).)))). ( -30.90, z-score =  -2.32, R)
>consensus
____UAAAUACACCAACAAGCAGGGCGAUGAUCCAACUCAAAGUUGAU______________CGUCCCAUGCCAAUCGUUUAUCGGUAAUUGUUUAUCGUCGCCAUUGUC
...................((((((((((((..((((.....))))............................((((.....)))).........)))))))).)))). (-11.11 = -12.67 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:51 2011