| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,451,995 – 16,452,066 |
| Length | 71 |
| Max. P | 0.870337 |
| Location | 16,451,995 – 16,452,066 |
|---|---|
| Length | 71 |
| Sequences | 15 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 84.99 |
| Shannon entropy | 0.36700 |
| G+C content | 0.59371 |
| Mean single sequence MFE | -27.99 |
| Consensus MFE | -16.89 |
| Energy contribution | -17.34 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16451995 71 - 22422827 CUGCGCAAGGAGGUGAUACGCAACAAGAUCCGUGCCAUUGGCAAGAUGGCGCGCGUCUUCUCCGUGCUGCG ..(((((.(((((((...)))...(((((.(((((((((.....))))))))).))))))))).))).)). ( -30.90, z-score = -2.34, R) >droSim1.chrX 12650181 71 - 17042790 CUGCGCAAGGAGGUGAUCCGCAACAAGAUCCGUGCCAUCGGCAAGAUGGCGCGCGUCUUCUCCGUGCUGCG ..(((((.(((((((...)))...(((((.(((((((((.....))))))))).))))))))).))).)). ( -33.40, z-score = -2.86, R) >droSec1.super_17 275628 71 - 1527944 CUGCGCAAGGAGGUGAUCCGCAACAAGAUCCGUGCCAUCGGCAAGAUGGCGCGCGUCUUCUCCGUGCUGCG ..(((((.(((((((...)))...(((((.(((((((((.....))))))))).))))))))).))).)). ( -33.40, z-score = -2.86, R) >droYak2.chrX 10556719 55 - 21770863 ----------------UCCGCAACAAGAUCCGUGCCAUCGGCAAGAUGGCGCGCGUUUUCUCCGUGCUGCG ----------------..((((.(((((.((((((((((.....))))))))).)...)))...)).)))) ( -22.20, z-score = -2.32, R) >droEre2.scaffold_4690 6810223 71 - 18748788 CUGCGCAAGGAGGUGAUCCGCAACAAGAUCCGUGCCAUCGGAAAGAUGGCGCGCGUCUUCUCCGUGCUGCG ..(((((.(((((((...)))...(((((.(((((((((.....))))))))).))))))))).))).)). ( -33.40, z-score = -3.24, R) >droAna3.scaffold_13117 5312009 71 - 5790199 CUGCGCAAGGAGGUCAUCCGGAACAAGAUCCGGGCCAUCGGCAAGAUGGCGCGCGUCUUCUCCGUGCUCCG ..((((..(((.....)))(((..(((((.((.((((((.....)))))).)).))))).))))))).... ( -31.70, z-score = -2.31, R) >dp4.chrXL_group1e 9543671 71 + 12523060 GCGCGCAAGGAGGUCAUACGCAACAAGAUCCGGGCCAUUGGCAAGAUGGCGCGCGUCUUCUCCGUGCUGCG (((.(((.((((((.....))...(((((.((.((((((.....)))))).)).))))))))).)))))). ( -28.60, z-score = -1.17, R) >droPer1.super_18 62912 71 + 1952607 GCGCGCAAGGAGGUCAUACGCAACAAGAUCCGGGCCAUUGGCAAGAUGGCGCGCGUCUUCUCCGUGCUGCG (((.(((.((((((.....))...(((((.((.((((((.....)))))).)).))))))))).)))))). ( -28.60, z-score = -1.17, R) >droWil1.scaffold_181096 5866956 71 - 12416693 CUGCGUAAGGAGGUCAUAAGGAAUAAGAUUCGAGCCAUUGGUAAAAUGGCACGCGUCUUCUCGGUUCUGCG ((.(....).)).......((((((((((.((.((((((.....)))))).)).)))))....)))))... ( -20.00, z-score = -1.36, R) >droVir3.scaffold_12970 4710761 71 + 11907090 CUGCGCAAGGAGGUCAUCCGGAACAAGAUACGCGCCAUUGGCAAAAUGGCGCGCGUCUUCUCCGUGCUGCG ..((((..(((.....)))(((..((((..(((((((((.....)))))))))..)))).))))))).... ( -33.70, z-score = -3.62, R) >droMoj3.scaffold_6473 3272580 71 - 16943266 CUGCGCAAGGAGGUCAUCCGCAACAAGAUACGCGCCAUUGGCAAAAUGGCGCGCGUCUUCUCAGUGCUGCG ...((((.(((.....)))(((..((((..(((((((((.....)))))))))..)))).....))))))) ( -30.70, z-score = -2.80, R) >droGri2.scaffold_14853 1336217 71 + 10151454 CUGCGCAAGGAGGUCAUACGCAACAAGAUACGCGCCAUUGGCAAAAUGGCGCGCGUCUUCUCCGUGCUGCG ..(((((.((((((.....))...((((..(((((((((.....)))))))))..)))))))).))).)). ( -32.00, z-score = -3.23, R) >anoGam1.chr2R 2217986 71 - 62725911 GCGCGCAAGGAGGUGAUCCGCAACAAGAUCCGCGCGAUCGGCAAGAUGGCGCGCGUCUUCUCGGUGCUGCG ((((((..(((.....))).....(((((.(((((.(((.....))).))))).)))))....)))).)). ( -29.50, z-score = -0.33, R) >apiMel3.Group4 2603944 71 + 10796202 CUACGCAAGGAGGUUAUCAGAAACAAGAUCAGAGCCAUUGGCAAAAUGGCGCGCGUCUUCUCCGUCCUGAG ........(((((((......)))(((((..(.((((((.....)))))).)..)))))))))........ ( -17.80, z-score = -0.35, R) >triCas2.chrUn_12 530672 70 + 931581 -UGAGGAAAGAAGUGAUACGUAACAAAAUCCGGGCGAUUGGUAAAAUGGCUCGAGUAUUCUCUGUUCUAAG -.(((((.....((........))......(((((.(((.....))).)))))....)))))......... ( -14.00, z-score = -0.67, R) >consensus CUGCGCAAGGAGGUCAUCCGCAACAAGAUCCGUGCCAUUGGCAAGAUGGCGCGCGUCUUCUCCGUGCUGCG ..((((...(((((........))(((((.((.((((((.....)))))).)).)))))))).)))).... (-16.89 = -17.34 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:50 2011