| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,443,030 – 16,443,130 |
| Length | 100 |
| Max. P | 0.620047 |
| Location | 16,443,030 – 16,443,130 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 57.62 |
| Shannon entropy | 0.78198 |
| G+C content | 0.45242 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.78 |
| Mean z-score | -0.35 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16443030 100 - 22422827 ---UUUGUGUGUGCCUGUGCGAGUGGGCGUGUCUGUUGAGCAGGAUUGGUCCACUUGCCCUUAGAUUAUCUAUAAUCGCAGACAUGUCGUCACUGGUCGUUAU ---...((((.(((....((((((((((...((((.....))))....)))))))))).....(((((....)))))))).)))).................. ( -31.40, z-score = -1.11, R) >droSim1.chrX 12641334 100 - 17042790 ---UGUGUGUGUGCCUGUGCGAGUGGGCGUGUCUGUUGAGCAGGAUUGGUCCACUUGCCCUUAGAUUAUCAAUAAACGCAGACAUGCCGACACUGGUCGUUAC ---.((((((.((((((.((((((((((...((((.....))))....))))))))))...))).(((....)))..))).))))))((((....)))).... ( -33.90, z-score = -1.11, R) >droSec1.super_17 266698 100 - 1527944 ---UGUGUGUGUGCCUGUGCGAGUGGGCGUGUCUGUUGAGCAGGAUUGGUCCACUUGCCCUUAGAUUAUCAAUAAACGCAGACAUGCCGUCACUGGUCGUUAC ---.(((.(((((.((((((((((((((...((((.....))))....)))))))))).....(.....).......)))).)))))...))).......... ( -30.40, z-score = -0.07, R) >droYak2.chrX 10547820 100 - 21770863 ---UUUCUGUGUGCCUGUGCGAGUGGGCGUGUCUGUUGAGCAGGAUUGGUCCACUUGUCUUUAGAUUACCAUAAAUCGCAGACAUGCCGUCACUGGUCGAUUC ---...............((.(((((((((((((((.....(((((.((....)).)))))..((((......)))))))))))))))..)))).))...... ( -29.60, z-score = -0.48, R) >droWil1.scaffold_181096 5855989 76 - 12416693 -----UGUAUGCGUACGUGUGUGUGUAUGUUGCUGAUGAAU-UAAUUAAUAUAUUUGGGUCCAG-UUACCAUUUAGUUUUUUC-------------------- -----.(((.(((((((......))))))))))....(((.-.((((((......(((......-...))).))))))..)))-------------------- ( -11.00, z-score = 0.52, R) >droVir3.scaffold_12970 4699925 90 + 11907090 CUUGUUUCAUACACAUGUACAUUCGUAUAUGCACAAAGUAAGAGCAUAUUUUUCACACGCCCAG--CACCUUUAAUUGCUAUGUUAUAAUCG----------- .((((..(((...(((((((....)))))))...............................((--((........)))))))..))))...----------- ( -10.80, z-score = 0.12, R) >consensus ___UUUGUGUGUGCCUGUGCGAGUGGGCGUGUCUGUUGAGCAGGAUUGGUCCACUUGCCCUUAGAUUACCAAUAAUCGCAGACAUGCCGUCACUGGUCGUUAC ........(((((.((((((((((((((...((((.....))))....)))))))))...................))))).)))))................ (-11.64 = -12.32 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:49 2011