| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,411,624 – 16,411,763 |
| Length | 139 |
| Max. P | 0.530463 |
| Location | 16,411,624 – 16,411,763 |
|---|---|
| Length | 139 |
| Sequences | 6 |
| Columns | 150 |
| Reading direction | forward |
| Mean pairwise identity | 69.50 |
| Shannon entropy | 0.54338 |
| G+C content | 0.52877 |
| Mean single sequence MFE | -48.12 |
| Consensus MFE | -23.16 |
| Energy contribution | -22.88 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16411624 139 + 22422827 UUUGAUUCCUGCCUUGGGGCCCAGGCCAUUCGGUCCGGAUUGCUAAGCUUCUUAGCCACUCGAGGCACUCA--------GUCAUUUCGG--GGACUCCACCUUGAUAAGUAAUUGAA-GCCCCCGGGCAGUGUCAAUAACUAUGGCAAUG .(((((..((((((.(((((((.((((....)))).))((((((..(((((..........))))).....--------......((((--((......))))))..))))))....-))))).)))))).))))).............. ( -48.20, z-score = -1.42, R) >droSec1.super_17 229864 139 + 1527944 UUUGAUUCCUGCCUUGGGGCCCAGGCCACUCGGUCCGGAUUGCUAAGCUCCUUAGCCACUCGAGGCACUCA--------GUCAUUUCGG--GGGCUCCACCUUGAUAAGUAAUUGAA-GCCCCCGAGCAGUGUCAAUAACUAUGGCAAUG ..(((((..(((((((((..((.((((....)))).))...((((((...))))))..)))))))))...)--------)))).(((((--(((((.((..............)).)-)))))))))((.(((((.......))))).)) ( -51.74, z-score = -2.16, R) >droYak2.chrX_random 378100 119 + 1802292 UUUGAUUCCUGCCUUGGGGCCC---UUAAGCUCCUUAGCCACUCGAGGCACUCAGUGA-------------------------UUGCGG--CGACUCCACCUUGAUAAGUAAUUGAA-GCCGCCGGGCAGUGUCAAUAACUAUGGCAAUG .(((((..((((((.(((((..---....))))).....((((.(((...))))))).-------------------------..((((--(..(.....((.....)).....)..-))))).)))))).))))).............. ( -33.00, z-score = 0.39, R) >droEre2.scaffold_4690 8056123 124 - 18748788 UUUGAUUCCUGCCUUGGGGCCCAGGCUAUUCGGCCCGGUUCUAUAAGCUCCUUAGCCAC-----------------------AUUUCGG--GGGCUCCACCUCGAUAAGUAAUUGAA-GCCCCCAGGCAGUGUCAAUAACUAUGACAAUG .(((((..((((((.(((((...(((((...(((............)))...)))))((-----------------------...((((--((......))))))...)).......-))))).)))))).))))).............. ( -44.70, z-score = -2.47, R) >dp4.chrXL_group1e 9509633 148 - 12523060 UCUGGUUCUGGGCUCUGGGCUCUGGGC-UUGGUUCUGGACCGGUAAGCGCCUUAGCCAGGGCACUCAGUCAUAUUGAGUGUACUCCCAGCUGGGAGCCACCUUGAUAAGUAAUUAAA-GCCCGCAGGCAAUGCCAAUAGCUAUGGCAAUG ..((.((.((((((...((((((.(((-(.((.(((((...(((....)))....)))))(((((((((...)))))))))...)).)))).)))))).......(((....))).)-))))).)).)).(((((.......)))))... ( -56.40, z-score = -0.63, R) >droPer1.super_18 28674 149 - 1952607 UCUGGUUCUGGGCUCUGGGCUCUGGGC-UUGGUUCUGGACCGGUAAGCGCCUUAGCCAGGGCACUCAGUCAUAUUGAGUGUACUCCCAGCUGGGAGCCACCUUGAUAAGUAAAUAAAAGCCCGCAGGCAAUGCCAAUAACUAUGGCAAUG ..((.((.((((((...((((((.(((-(.((.(((((...(((....)))....)))))(((((((((...)))))))))...)).)))).))))))((........)).......)))))).)).)).(((((.......)))))... ( -54.70, z-score = -0.75, R) >consensus UUUGAUUCCUGCCUUGGGGCCCAGGCCAUUCGGUCCGGACCGCUAAGCUCCUUAGCCAC___A__CA_UCA________GU_AUUUCGG__GGGCUCCACCUUGAUAAGUAAUUGAA_GCCCCCAGGCAGUGUCAAUAACUAUGGCAAUG ........((((((.(((((((.((((....)))).)).....................................................((......)).................))))).))))))(((((.......)))))... (-23.16 = -22.88 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:48 2011