| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,406,837 – 16,406,946 |
| Length | 109 |
| Max. P | 0.543604 |
| Location | 16,406,837 – 16,406,946 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 88.74 |
| Shannon entropy | 0.19726 |
| G+C content | 0.40798 |
| Mean single sequence MFE | -17.16 |
| Consensus MFE | -15.12 |
| Energy contribution | -15.00 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16406837 109 - 22422827 UCGUGAGUAACUUUG-----CAAUAUUCGAUCGUUCGAUAACUACUCGAUAACUCGAUCAUAGAGCCACCACUUGCGUCCCAAUAAUAAUCUCCAACUCAGAUUCAUUCAAAUU .((..(((......(-----(..(((..(((((.((((.......)))).....))))))))..))....)))..))..........(((((.......))))).......... ( -15.90, z-score = -0.72, R) >droEre2.scaffold_4690 8051593 100 + 18748788 UUGUGAGUAACUUUG-----CAAUAUUUGAUCGUUCGAUAACUAUUCGAUAACUCGAUCAUAGGCCCACCACUCGCGUCCC---AACAAUC------UCAGAUCCAUUCAAACU ..((((((.......-----.......((((((.((((.......)))).....))))))..((....)))))))).....---.......------................. ( -18.70, z-score = -1.87, R) >droYak2.chrX 10522890 111 - 21770863 UCGUGCGUAACUUUGCGUAACAAUAUUCGAUCGUUCGAUAACUAUUCGAUAACUCGAUCAUAGAGCCACCACUCGCGUCCC---AACAAUAACAAUCUCAGAUCCAUUCAAAUG ...((((((....)))))).........(((((.((((.......)))).....)))))...(((......))).......---.............................. ( -16.10, z-score = -0.29, R) >droSec1.super_17 225140 106 - 1527944 UCGUGAGUAACUUUG-----CAAUAUUCGAUCGUUCGAUAACUACUCGAUAACUCGAUCAUAGAGCCACCACUCGCGUCCC---AACAAUCUCCAAAUCAGAUCCAUUCAAAUU .(((((((......(-----(..(((..(((((.((((.......)))).....))))))))..))....)))))))....---.............................. ( -17.80, z-score = -1.55, R) >droSim1.chrX 12605604 106 - 17042790 UCGUGAGUAACUUUG-----CAAUAAUCGAUCGUUCGAUAACUACUCGAUAACUCGAUCAUAGAGCCACCACUCGCGUCCC---AACAAUCUCCAAAUCAGAUCCAUUCAAAUU .(((((((......(-----(....(((((....)))))..(((.((((....))))...))).))....)))))))....---.............................. ( -17.30, z-score = -1.44, R) >consensus UCGUGAGUAACUUUG_____CAAUAUUCGAUCGUUCGAUAACUACUCGAUAACUCGAUCAUAGAGCCACCACUCGCGUCCC___AACAAUCUCCAAAUCAGAUCCAUUCAAAUU .(((((((....................(((((.((((.......)))).....)))))...(......))))))))..................................... (-15.12 = -15.00 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:46 2011