| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,519,493 – 11,519,613 |
| Length | 120 |
| Max. P | 0.790407 |
| Location | 11,519,493 – 11,519,613 |
|---|---|
| Length | 120 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.50 |
| Shannon entropy | 0.54249 |
| G+C content | 0.42060 |
| Mean single sequence MFE | -33.99 |
| Consensus MFE | -9.59 |
| Energy contribution | -7.62 |
| Covariance contribution | -1.97 |
| Combinations/Pair | 2.00 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11519493 120 + 23011544 AAUCUAACACACAAUAAACUUCUUGACCAGAUCAAAGAAGUCCGUCGUGAGGGUGGCAUUAUGUGCUAUCCCAAGUUGUUGGCCGAUUUUGAUCGGACCGAGAAGUUUAUUGCCAUCAAA ...........((((((((((((((.((.((((((((..(.(((...((.(((((((((...)))))))))))......))).)..))))))))))..))))))))))))))........ ( -42.00, z-score = -4.49, R) >droSim1.chr2L 11335931 120 + 22036055 AAUCUGACACACAAUAAACUUCUUGACCAGAUCAAAGAAGUCCGUCGUGAGGGUGGCAUUAUGUGCUAUCCCAAGUUGUUGGCCGAUUUUGAUCGGACCGAGAAGUUUAUUGCCAUCAAA ....(((....((((((((((((((.((.((((((((..(.(((...((.(((((((((...)))))))))))......))).)..))))))))))..))))))))))))))...))).. ( -42.60, z-score = -4.28, R) >droSec1.super_3 6916742 120 + 7220098 AAUCUGACACACAAUAAACUUCUUGACCAGAUCAAAGAAGUCCGUCGUGAGGGUGGCAUUAUGUGCUAUCCCAAGUUGUUGGCCGAUUUUGAUCGGACCGAGAAGUUUAUUGCCAUCAAA ....(((....((((((((((((((.((.((((((((..(.(((...((.(((((((((...)))))))))))......))).)..))))))))))..))))))))))))))...))).. ( -42.60, z-score = -4.28, R) >droYak2.chr2L 7950664 120 + 22324452 AAUCUGAUACACAACAAACUUCUUGACCAGAUCAAAGAAGUUCGCCGUAAAGGUGGCAUUAUGUGCUACCCCAAGUUGUUGGCCGAUUUUGAUCGAACCGAGAAGUUUAUUGCCAUUAAG ...........(((.((((((((((....(((((((...(((.((((....((((((((...)))))))).........)))).))))))))))....)))))))))).)))........ ( -34.52, z-score = -3.54, R) >droEre2.scaffold_4537 31610 120 - 52796 AAUCUGACGCAUAACAAACUUCUUGACCAGAUCAAAGAAGUUCGCCAUAAGGGUGGCAUUAUGUGCUAUCCCAAGUUGUUGGCCGAUUUCGAUCGAACCGAGGAGUUUAUUGCCAUUAAG ........(((....((((((((((....((((...((((((.((((((((((((((((...)))))))))....))).)))).))))))))))....))))))))))..)))....... ( -37.80, z-score = -3.40, R) >droAna3.scaffold_12916 9240707 118 - 16180835 AAUCUAUUAAGGAAUAAGAUUUUCGCACAGAUCAACGAGUGUCGCCGGCAAGGAGGUAUAAUUCAUUUCCCCCUAUUGAUGAAGGACUACGACGACACACUU-AUUUAUUUGCAACAAA- ...........(((((((....(((..........)))((((((.((....((((((.......)))))).(((........)))....)).)))))).)))-))))............- ( -22.80, z-score = -0.66, R) >dp4.chr4_group3 9292394 120 - 11692001 AACACAAAGCACAACAAGCUUUAUAAGUGUCUCGAUGAUGUACGCUACCAAGGUGGUAUUAUGUUAUAUCCCCAGCUCAUGACGGAUUAUGACCAGACGCUGGAGUUAUUUGCCAAAAAG ........(((.....(((((....(((((((..((((((((.(((((....)))))..)))))))).......(.((((((....)))))).)))))))).)))))...)))....... ( -25.10, z-score = -0.05, R) >droPer1.super_1 6405582 120 - 10282868 AACACAAAGCACAACAAGCUAUAUAAGUGUCUCGAUGAUGUACGCUACCAAGGUGGUAUUAUGUUAUAUCCCCAGCUCAUGACGGAUUAUGACCAGACGCUGGAGUUAUUUGCCAAAAAG ........(((.....((((.....(((((((..((((((((.(((((....)))))..)))))))).......(.((((((....)))))).))))))))..))))...)))....... ( -24.50, z-score = 0.12, R) >consensus AAUCUAACACACAACAAACUUCUUGACCAGAUCAAAGAAGUCCGCCGUCAAGGUGGCAUUAUGUGCUAUCCCAAGUUGUUGGCCGAUUUUGAUCGGACCGAGAAGUUUAUUGCCAUAAAG .......((((......(((((((..........)))))))..(((((....)))))....))))....................................................... ( -9.59 = -7.62 + -1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:01 2011