| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,393,876 – 16,393,966 |
| Length | 90 |
| Max. P | 0.984231 |
| Location | 16,393,876 – 16,393,966 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.89 |
| Shannon entropy | 0.05434 |
| G+C content | 0.33250 |
| Mean single sequence MFE | -9.56 |
| Consensus MFE | -10.12 |
| Energy contribution | -9.96 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.67 |
| Structure conservation index | 1.06 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16393876 90 + 22422827 AUAACAGUAUAU---AUAUAUUGAGGGAUAUGAAGAUACAGCGAUACACAAAACAAGGCCAAACAAAAGGAAACACAAUUAUCGAAGAGUAGA ......((((..---.((((((....))))))...))))..(((((..........(......)....(....).....)))))......... ( -9.40, z-score = -1.92, R) >droSim1.chrX_random 4314055 88 + 5698898 AUAACAGUAUAU---AUAUAUUGAGGGAUAUGAAGAUACAGCGAUACACAAAACAAGGCCAAACA--AGGAAACACAAUUAUCGAAGAGUAGA ......((((..---.((((((....))))))...))))..(((((..........(......).--.(....).....)))))......... ( -9.40, z-score = -1.74, R) >droSec1.super_17 207633 91 + 1527944 AUAACAGUAUAUUGAGUAUAUUGAGGGAUAUGAAGAUACAGCGAUACACAAAACAAGGCCAAACA--AGGAAACACAAUUAUCGAAGAGUAGG ....((((((((...)))))))).............(((..(((((..........(......).--.(....).....)))))....))).. ( -10.20, z-score = -1.21, R) >droYak2.chrX 10509086 88 + 21770863 AUAACAGUAUAU---AUAUAUUGAGGGAUAUGAAGAUACAGCGAUACACAAAACAAGGCCAAACA--AGGAAACACAAUUAUCGAAGAGUAGA ......((((..---.((((((....))))))...))))..(((((..........(......).--.(....).....)))))......... ( -9.40, z-score = -1.74, R) >droEre2.scaffold_4690 8038926 88 - 18748788 AUAACAGUAUAU---AUAUAUUGAGGGAUAUGAAGAUACAGCGAUACACAAAACAAGGCCAAACA--AGGAAACACAAUUAUCGAAGAGUAGA ......((((..---.((((((....))))))...))))..(((((..........(......).--.(....).....)))))......... ( -9.40, z-score = -1.74, R) >consensus AUAACAGUAUAU___AUAUAUUGAGGGAUAUGAAGAUACAGCGAUACACAAAACAAGGCCAAACA__AGGAAACACAAUUAUCGAAGAGUAGA ....((((((((...)))))))).............(((..(((((..........(......)....(....).....)))))....))).. (-10.12 = -9.96 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:41 2011