Locus 14927

Sequence ID dm3.chrX
Location 16,393,039 – 16,393,134
Length 95
Max. P 0.788131
window20566

overview

Window 6

Location 16,393,039 – 16,393,134
Length 95
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 91.83
Shannon entropy 0.12493
G+C content 0.30433
Mean single sequence MFE -18.70
Consensus MFE -16.39
Energy contribution -17.32
Covariance contribution 0.94
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.69
SVM RNA-class probability 0.788131
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16393039 95 + 22422827
GUGAAGCCACACAGCAUUGUAUAUUAUAUA--------UAUAUUGAUAUACAGUCGUAAUUAGAGUUAUUACAAAGUAGUUAUACAGCAGAGAGCAGUAGUAG
(((....)))...(((((((((((((....--------.....))))))))))).)).........((((((...(((....))).((.....)).)))))). ( -18.00, z-score =  -1.92, R)
>droEre2.scaffold_4690 8038094 97 - 18748788
GUGAAGCCACACAGCAAUGUAUAUUACAUAUA------UUUAUUGAUAUAUACUCGUAAUUAGAGUUAUUACAAAGUAGUUAUACAGCAGAGAGCAGUAGUAG
(((....)))(((....))).(((((((((((------((....))))))).((((((((.......)))))...(((....)))....)))....)))))). ( -18.00, z-score =  -1.57, R)
>droSec1.super_17 206810 103 + 1527944
GUGAAGGCACACAGCAUUGUAUAUUACAUAUAUUCAUAUAUAUUGAUAUAUAGUCGUAAUUAGAGUUAUUACAAAGUAGUUAUACAGCAGAGAGCAGUAGUAG
(((....)))...(((((((((((((.((((((....))))))))))))))))).)).........((((((...(((....))).((.....)).)))))). ( -19.40, z-score =  -1.76, R)
>droSim1.chrX_random 4313232 103 + 5698898
GUGAAGGCACACAGCAUUGUAUAUUAUAUAUAUUCAUAUAUAUUGAUAUAUAGUCGUAAUUAGAGUUAUUACAAAGUAGUUAUACAGCAGAGAGCAGUAGUAG
(((....)))...(((((((((((((.((((((....))))))))))))))))).)).........((((((...(((....))).((.....)).)))))). ( -19.40, z-score =  -1.66, R)
>consensus
GUGAAGCCACACAGCAUUGUAUAUUACAUAUA______UAUAUUGAUAUAUAGUCGUAAUUAGAGUUAUUACAAAGUAGUUAUACAGCAGAGAGCAGUAGUAG
(((....)))...(((((((((((((.((((((....))))))))))))))))).)).........((((((...(((....))).((.....)).)))))). (-16.39 = -17.32 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:40 2011