| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,362,551 – 16,362,644 |
| Length | 93 |
| Max. P | 0.993016 |
| Location | 16,362,551 – 16,362,644 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 62.30 |
| Shannon entropy | 0.74062 |
| G+C content | 0.61188 |
| Mean single sequence MFE | -35.69 |
| Consensus MFE | -12.69 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.63 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.993016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16362551 93 - 22422827 CCAGCCAGGACAACGGCCAUGCGGACUGUCUUAG-CGCGCAG-AUCCUGCAAGGCCGUUGAACUGGAUCGGACC-----GGACCCAACGGCAAUCCAACC-------- ....((((..((((((((.((((((((((.....-...))))-.))).))).))))))))..))))...(((((-----(.......)))...)))....-------- ( -41.40, z-score = -3.93, R) >droSec1.super_17 182278 93 - 1527944 CCAGCCAGGACAACGGCCAUGCGGACUGUCUUAG-CGCGCAG-AUCCUGCAAGACCGUUGAACUGGAUCGGACC-----GGACCCAACGGCAAUCCAACC-------- ....((((..((((((.(.((((((((((.....-...))))-.))).))).).))))))..))))...(((((-----(.......)))...)))....-------- ( -34.30, z-score = -2.48, R) >droYak2.chrX 10481380 93 - 21770863 CCAGCCAGGACAACGGCCAUGCGGACUGUCUUAG-CGCGCAG-AUCCUGCAAGGCCGUUGAACUGGAUCGGACC-----GGACCCAACGGCAAUUCAACC-------- ((..((((..((((((((.((((((((((.....-...))))-.))).))).))))))))..))))...)).((-----(.......)))..........-------- ( -40.20, z-score = -3.70, R) >droEre2.scaffold_4690 8013359 93 + 18748788 CCAGCCAGGACAACGGCCAUGCGGACUGUCUUAG-CGCGCAG-CUCCUGCAAGGCCGUUGAACUGGAUCGGACC-----GGACCCAACGGCAAUCCAACC-------- ....((((..((((((((.((((((((((.....-...))))-.))).))).))))))))..))))...(((((-----(.......)))...)))....-------- ( -41.40, z-score = -3.57, R) >droAna3.scaffold_13335 1760192 90 + 3335858 CCAGCCAGGACAACGGCCAUGCGGACUGUCUUAG-CGCACAGUAUCCUGCAAGACCGUUGAACUGGAUCGGACCGACAAGGACCCGAAGGC----------------- ((..((((..((((((.(.((((((((((.....-...)))))...))))).).))))))..)))).((((.((.....))..)))).)).----------------- ( -34.50, z-score = -2.87, R) >dp4.chrXL_group1e 9463264 99 + 12523060 CCAGCCAGCACAACGGCCAUGCGGACUGUCUUAG-CGUGCAGCAUCCGGCAAGGCCGCUG----GACUGGAGCCG----GGCCCCCAAGGUCCGGACCCCGACGGCCG (((((((((.....((((.((((((((((.....-...))))..))).))).))))))))----).))))..(((----((((.....)))))))............. ( -44.60, z-score = -0.95, R) >droPer1.super_653 3659 99 + 12983 CCAGCCAGCACAACGGCCAUGCGGACUGUCUUAG-CGUGCAGCAUCCGGCAAGGCCGCUG----GACUGGAGCCG----GGCCCCCAAGGUCCGGACCCCGACGGCCG (((((((((.....((((.((((((((((.....-...))))..))).))).))))))))----).))))..(((----((((.....)))))))............. ( -44.60, z-score = -0.95, R) >droWil1.scaffold_181096 5777461 78 - 12416693 --CCUCAAUGCUUUGGUCGUGCGCAAUGCCUUAGUCCUGCAUUGUC--GCAGGGUCGAUGCUUUGAUUUGGUCCU----GGCCCCC---------------------- --..((((.((.(((..(.((((((((((.........)))))).)--))).)..))).)).))))...(((...----.)))...---------------------- ( -28.80, z-score = -2.65, R) >droMoj3.scaffold_6359 3280743 85 - 4525533 -CAGCCAAUGCAAUGGCCGUGCGCACUGU-UUAG-CACACAU--GCGCGUACGACUGCUGCCUUGGCCCCAA-ACACCUGGCCGCACCUUC----------------- -..(((((.(((..((.(((((((.((((-....-...))).--).))))))).))..))).))))).(((.-.....)))..........----------------- ( -28.00, z-score = -0.73, R) >droVir3.scaffold_12970 2066508 87 - 11907090 CCAGCCAAUGCAAUGGCCGUGCGGAAUGU-UUAG-CACACAU--UUGUGUACGACAGUUGCAUUGGCCCAAACACCUUUGGCCAAACAUCC----------------- ...(((((((((((.(.((((((((((((-....-...))))--)).)))))).).)))))))))))(((((....)))))..........----------------- ( -30.70, z-score = -2.49, R) >droGri2.scaffold_14853 3216658 81 + 10151454 CCAGUCAAUGCAAUGGCCGUCCGGAAUGU-UUAG-CACACAU--UUGUGUACGACGGUUGCAUUGGCCCCAAUG---UUGGCCCAUCC-------------------- ...(((((((((...((((((......(.-....-)((((..--..))))..))))))))))))))).(((...---.))).......-------------------- ( -24.10, z-score = -0.39, R) >consensus CCAGCCAGGACAACGGCCAUGCGGACUGUCUUAG_CGCGCAG_AUCCUGCAAGGCCGUUGAACUGGAUCGGACC_____GGCCCCAACGGC_______CC________ ....((((..((((((.(.(((.(.((((.........))))....).))).).))))))..)))).......................................... (-12.69 = -12.33 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:37 2011