| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,350,557 – 16,350,711 |
| Length | 154 |
| Max. P | 0.668073 |
| Location | 16,350,557 – 16,350,711 |
|---|---|
| Length | 154 |
| Sequences | 8 |
| Columns | 163 |
| Reading direction | reverse |
| Mean pairwise identity | 70.46 |
| Shannon entropy | 0.59236 |
| G+C content | 0.48004 |
| Mean single sequence MFE | -41.98 |
| Consensus MFE | -18.36 |
| Energy contribution | -19.41 |
| Covariance contribution | 1.05 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16350557 154 - 22422827 -----GUUUUUU--UGGGGCAGCCUGCGUUGUGUCGUUGGCUCCCCUCGACCUCCAAAAAUUCCUUCAACCCGAGCCAGAGCCGUUGUUGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAAA--UGGCUAUAGGACAACCGG -----.......--.((((.((((.(((......))).))))))))........................(((..((..(((((((..(((((.(((..(((((.((((..........)))))))))....))).)))))))--)))))...)).....))) ( -44.10, z-score = -1.00, R) >droSim1.chrX_random 4296529 153 - 5698898 -----GUUUUUU--UGGGG-AGCCUGCGUUGUGUCGCUGGCACCCCUCGACCUCCAAAGAUUCCUCCAAACCGAGCCAGAGCCGUUGUUGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAAA--UGGCUAUAGGACAACCGG -----.......--.((((-.(((.(((......))).))).))))........................(((..((..(((((((..(((((.(((..(((((.((((..........)))))))))....))).)))))))--)))))...)).....))) ( -44.80, z-score = -0.85, R) >droSec1.super_17 170323 152 - 1527944 ------GUUUUU--UGGGG-AGCCUGCGUUGUGUCGCUGGCACCCCUCGACCUCGAAAAAUUCCUACAAACCGAGCCAGAGCCGUUGUUGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAAA--UGGCUAUAGGACAACCGG ------......--.((((-.(((.(((......))).))).))))(((....)))..............(((..((..(((((((..(((((.(((..(((((.((((..........)))))))))....))).)))))))--)))))...)).....))) ( -46.50, z-score = -1.57, R) >droYak2.chrX 10469802 160 - 21770863 GUUUUUAUUUUUGGGGGGGGAGCCUGCGUUGUGUCGUUGGCUCCCCUCGACCUCC-UAGAUCCCCCAAACCCGAGCCAGAGCCGUUGUUGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAGA--UGGCUAUAGGACAACCGG .........(((((((((((((((.(((......))).))))))))..((.(...-..).))))))))).(((..((..(((((((..(((((.(((..(((((.((((..........)))))))))....))).)))))))--)))))...)).....))) ( -57.80, z-score = -2.24, R) >droEre2.scaffold_4690 8001550 150 + 18748788 ------GUUUUU---GGGGGAGCCUGCGUUGUGUCGUUGGCUCCCCUCGACCUCC-UAGAUCCCCC-AACCCGAGCCAGAGCCGUUGUUGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAGA--UGGCUAUAGGACAACCGG ------....((---(((((((((.(((......))).)))))))).))).....-..........-...(((..((..(((((((..(((((.(((..(((((.((((..........)))))))))....))).)))))))--)))))...)).....))) ( -49.50, z-score = -1.48, R) >droAna3.scaffold_13335 1748234 133 + 3335858 -----------------------GUUCAUUGAG-GGUCCUCUUGGCGGAGGAUCCUUGCAAUCCUUGCCCCCGAACC--AGCCGUUAUCGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAGA--UGGCUGUAGAACA--CAA -----------------------((((...(((-((((((((....)))))))))))(((.....)))........(--(((((((...((((.(((..(((((.((((..........)))))))))....))).)))).))--))))))..)))).--... ( -44.50, z-score = -2.64, R) >dp4.chrXL_group1e 9449886 132 + 12523060 ----------------------------CUUCUUCAUUGACU--CUAAAAUGUACAAGUACAAGUCCGAACAAAGUC-CAGCCGUUGUCGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAGAACUGGCUGUAGAACAACCAA ----------------------------....(((...((((--......((((....))))))))...........-((((((((.(.((((.(((..(((((.((((..........)))))))))....))).))))).))).)))))..)))....... ( -26.60, z-score = -0.24, R) >droWil1.scaffold_181096 5762007 142 - 12416693 -----------------GUUUUCUUUAAUACUUAUGUAUGUAUAUCAUGCCAUGCCCAACCAUCCAUCCAUCAAUC--GGACAGUUUAUGAGCAACUCAAUUUGAUAGCAACUUCCCCGGCUACAAAUGAUUAAAGGUUCAAA--AAACUGUGAUAAAAAUUA -----------------..........((((....))))...(((((...................(((.......--)))((((((.(((((......(((((.((((..........)))))))))........)))))..--)))))))))))....... ( -22.04, z-score = -0.19, R) >consensus _______UUUUU___GGGG_AGCCUGCGUUGUGUCGUUGGCUCCCCUCGACCUCCAAAAAUUCCUCCAAACCGAGCCAGAGCCGUUGUUGAGCAACUCUAUUUGAUAGCAACUUCCCCGGCUACAAAUUCUUAGUGGUUCAAA__UGGCUAUAGGACAACCGG ...........................................................................((..(((((...((((((.(((..(((((.((((..........)))))))))....))).))))))...)))))...))........ (-18.36 = -19.41 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:36 2011