| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,316,642 – 16,316,748 |
| Length | 106 |
| Max. P | 0.689751 |
| Location | 16,316,642 – 16,316,748 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Shannon entropy | 0.30975 |
| G+C content | 0.41809 |
| Mean single sequence MFE | -27.09 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.38 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16316642 106 - 22422827 -UUUUCUUAGCGGUCGCAUACCCGGUCACUCUGGGAAAUAACCAUCAAAGAAGCCAUUUU-AAUUCGAUAAGUCGAUCUCUUUGACUUUUUAUAUCGCGGCUAUAUAG -..........((((((...(((((.....)))))............((((((.((....-...((((....))))......)).)))))).....))))))...... ( -24.32, z-score = -1.79, R) >droSim1.chrX 12561826 106 - 17042790 -UUUUUUUAGCGGUCGCAGACCCGGUCACUCUGGGAAAUAACCAUCGAAGAAGCCAUUUU-AAUUCGAUAAGUCGAUAUUUUCGACUUUUUAUAUCGCGGCUAUACAG -..........((((((...(((((.....)))))........((((((...........-..))))))(((((((.....)))))))........))))))...... ( -28.72, z-score = -2.81, R) >droSec1.super_17 136447 107 - 1527944 UUUUUUUUAGCGGUCGCAGACCCGGUCACUCUGGGAAAUAACCAUCGAAGAAGCCAUUUU-AAUUCGAUAAGUCGAUAUUUUCGACUUUUUAUAUCGCGGCUAUGUAG ...........((((((...(((((.....)))))........((((((...........-..))))))(((((((.....)))))))........))))))...... ( -28.72, z-score = -2.35, R) >droYak2.chrX 10435878 107 - 21770863 -GUUUCUUAGCGGCCGAGGGUCUGGUCACACUGGGAAAUAGGCAUCGAAAAAGGUAUUUUCCAUUCGAUUAUUCGAUGUUUUCGACUUUUUGCUUCGCGGCGAUAAAG -(((((((((.(((((......)))))...))))))))).....(((((((.((......))..((((....))))..)))))))(((((((((....))))).)))) ( -27.20, z-score = -0.36, R) >droEre2.scaffold_4690 7967577 105 + 18748788 -AUUUCUUAGCGGCCGCGUGGCUGGUCACACUGGGAAAUAGCCAUCGAAUAAGCCAUUUUUCAUCCGAUUAAUCGAUAUUUUUGACUUUUUCCUUCGCGGCAAUAG-- -...........((((((.((..(((((...((..((((.((..........)).))))..))..(((....))).......)))))....))..)))))).....-- ( -26.50, z-score = -1.22, R) >consensus _UUUUCUUAGCGGUCGCAGACCCGGUCACUCUGGGAAAUAACCAUCGAAGAAGCCAUUUU_AAUUCGAUAAGUCGAUAUUUUCGACUUUUUAUAUCGCGGCUAUAUAG ............(((((...(((((.....))))).........(((((((.............((((....))))..)))))))...........)))))....... (-18.82 = -18.38 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:32 2011