| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,279,299 – 16,279,418 |
| Length | 119 |
| Max. P | 0.850094 |
| Location | 16,279,299 – 16,279,418 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.35 |
| Shannon entropy | 0.13946 |
| G+C content | 0.37736 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -24.61 |
| Energy contribution | -25.48 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16279299 119 - 22422827 UGGGGCUAUUAUU-GGGAUAUUAUUAUUUACACUUGUUGGCUGCUUACAUAAAUAAUUGGAUUGCGGCUAAACGUAAACAAACAGAUAAAAGCUCCGCGAAGCUAAACAAUUUGUGUCAG .((((((.(((((-.(((((....)))))..((...((((((((...((........))....))))))))..)).........))))).))))))(((((.........)))))..... ( -26.30, z-score = -1.30, R) >droSim1.chrX 12542334 119 - 17042790 UGGUGUUAUUAUU-GGGAUACUACUAUUUACACUCGUUGGCCGCUUACAUAAAUAAUUGGAUUGCGGCUAAACGUAAACAAACAGAUAAAAGCUCCGCGAAGCUAAACAAUUUGUGUCAG .(((((...((.(-((....))).))...)))))((((((((((...((........))....)))))).)))).......((((((...((((......)))).....))))))..... ( -26.10, z-score = -1.00, R) >droYak2.chrX 10399190 120 - 21770863 UGGAGUUAUUAUUGGGGAAACUACUGUUUACGCUCGUUGGCUGCUUACAUAAAUAAUUUGAUUGCGGCUAAACGUAAACAAACAGAUAAAAGCUCCGCGAAGCUAAACAAUUCGUGUUAA .((((((.(((((.((....))..((((((((....((((((((...((.........))...)))))))).))))))))....))))).))))))(((((.........)))))..... ( -36.60, z-score = -4.16, R) >droEre2.scaffold_4690 7930342 119 + 18748788 UGGGGUUUUUAUU-GGGAUACUACUGUUUACGCUGGCAGGCUGCUUACAUAAAUAAUUUGAUUGCGGCUAAACGUAAACAAACAGAUAAAAGCUCCGCGAAGCUAAACAAUUUGUGUCGA .((((((((((((-((....))..((((((((......((((((...((.........))...))))))...))))))))....)))))))))))).(((.((..........)).))). ( -31.40, z-score = -2.04, R) >consensus UGGGGUUAUUAUU_GGGAUACUACUAUUUACACUCGUUGGCUGCUUACAUAAAUAAUUGGAUUGCGGCUAAACGUAAACAAACAGAUAAAAGCUCCGCGAAGCUAAACAAUUUGUGUCAA .((((((.(((((.((....))..((((((((....((((((((...................)))))))).))))))))....))))).))))))(((((.........)))))..... (-24.61 = -25.48 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:28 2011