| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,278,598 – 16,278,753 |
| Length | 155 |
| Max. P | 0.842184 |
| Location | 16,278,598 – 16,278,718 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.33 |
| Shannon entropy | 0.15728 |
| G+C content | 0.32258 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -17.56 |
| Energy contribution | -17.84 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16278598 120 + 22422827 AUAAAACUUAGAAUGCACUCACCUUUUCUCCUCAGAUAUUGACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAAAUAUAUACGUAUAUAUACUAUCGUAU .....((((.(..(((((................(((((((....))))))).....(((((((....)))))))....)))))..).))))......(((((.(((.....)))))))) ( -22.80, z-score = -2.33, R) >droYak2.chrX 10398396 120 + 21770863 AAAGAACUUGGAAUGCACUCACCUUUUCUCCUCAGAUAUUGACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAUAUACAUACGUAUAUAUACUAUCGUAU ...((((((((..(((((................(((((((....))))))).....(((((((....)))))))....)))))..))))))((((((....))))))......)).... ( -30.50, z-score = -3.87, R) >droEre2.scaffold_4690 7929595 111 - 18748788 ACAAAACUUAGAAUGAGCUCACCUUUUCUCCUCAGAUAUUGACCUCAAUAUCACAAGGUUUUGUGCAAAUAGAGCAUUUGUGUAAGCCAAGUACAUACAUACGUAU-CGUAU-------- .............((.(((.((............(((((((....)))))))((((((((((((....))))))).))))))).))))).((((((((....))))-.))))-------- ( -23.00, z-score = -1.89, R) >droSec1.super_17 98296 120 + 1527944 ACAAAACUUAGAAUGCACUCACCUUUUCUUCUCAGAUAUUGACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAAAUACAUACAUAUAUAUACUAUCGUAU .....((((.(..(((((................(((((((....))))))).....(((((((....)))))))....)))))..).))))................((((....)))) ( -20.50, z-score = -1.70, R) >droSim1.chrX 12541564 119 + 17042790 ACAAAACUUAGAAUGCACUCACCUUUUCUUCUCAGAUAUUGACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGAAUUU-UGUAAGCCAAGUAAAUACAUACGUAUAUAUACUAUCGUAU (((((((((....(((((..(((((.........(((((((....)))))))..)))))...)))))....)))..)))-)))......((((.((((....))))...))))....... ( -20.80, z-score = -2.07, R) >consensus ACAAAACUUAGAAUGCACUCACCUUUUCUCCUCAGAUAUUGACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAAAUACAUACGUAUAUAUACUAUCGUAU .....((((.(..(((((................(((((((....))))))).....(((((((....)))))))....)))))..).))))............................ (-17.56 = -17.84 + 0.28)
| Location | 16,278,638 – 16,278,753 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.46 |
| Shannon entropy | 0.20207 |
| G+C content | 0.32472 |
| Mean single sequence MFE | -27.28 |
| Consensus MFE | -20.94 |
| Energy contribution | -21.42 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16278638 115 + 22422827 GACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAAAUAUAUACGUAUAUAUACUAUCGUAUGUGGACUUCAAUAUAUGUACAUAUAAGCCGUGAUA----- ........((((((..(((((.(..(((((.....)))))..))))))..(((.((((((..((.(((((((....))))))).))....)))))).))).........))))))----- ( -26.10, z-score = -1.59, R) >droYak2.chrX 10398436 115 + 21770863 GACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAUAUACAUACGUAUAUAUACUAUCGUAUGUGGGCUUCAAUAUAUGCACAUAUAAACCGUGAUG----- ........((((((..(((((((((((.((((((((((((.(....))))))...((((((((.(((.....))))))))))).))))...))).))))))...)))))))))))----- ( -31.00, z-score = -2.68, R) >droEre2.scaffold_4690 7929635 111 - 18748788 GACCUCAAUAUCACAAGGUUUUGUGCAAAUAGAGCAUUUGUGUAAGCCAAGUACAUACAUACGUAU---------CGUAUGGGGGCUUCAAUAUAUGUACAUAUACAUAUAUGUAUGAUG ....(((....(((((((((((((....))))))).)))))).(((((..((((((((....))))---------.))))...)))))..(((((((((....)))))))))...))).. ( -29.30, z-score = -1.73, R) >droSec1.super_17 98336 115 + 1527944 GACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAAAUACAUACAUAUAUAUACUAUCGUAUGUGGACUUCAAUAUAUGUACAUAUAAGCCGUGAUA----- ........((((((..(((((.(..(((((.....)))))..))))))((((...((((((((((.......))).))))))).))))...(((((....)))))....))))))----- ( -24.70, z-score = -1.27, R) >droSim1.chrX 12541604 114 + 17042790 GACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGAAUUU-UGUAAGCCAAGUAAAUACAUACGUAUAUAUACUAUCGUAUGUGGACUUCAAUAUAUGUACAUAUAAGCCGUGAUA----- ........((((((..(((((((((((.(((..(((..(-((.....)))((...((((((((.(((.....))))))))))).)))))..))).))))))...)))))))))))----- ( -25.30, z-score = -1.99, R) >consensus GACCUCAAUAUCACAAGGUUUUGUGCAAAUAAAGCAUUUGUGUAAGCCAAGUAAAUACAUACGUAUAUAUACUAUCGUAUGUGGACUUCAAUAUAUGUACAUAUAAGCCGUGAUA_____ ........((((((..(((((.(..(((((.....)))))..))))))((((...((((((((............)))))))).))))...(((((....)))))....))))))..... (-20.94 = -21.42 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:27 2011