Locus 14914

Sequence ID dm3.chrX
Location 16,267,726 – 16,267,897
Length 171
Max. P 0.960084
window20548 window20549

overview

Window 8

Location 16,267,726 – 16,267,829
Length 103
Sequences 7
Columns 114
Reading direction reverse
Mean pairwise identity 61.42
Shannon entropy 0.72991
G+C content 0.37086
Mean single sequence MFE -15.56
Consensus MFE -5.55
Energy contribution -4.19
Covariance contribution -1.36
Combinations/Pair 2.14
Mean z-score -1.33
Structure conservation index 0.36
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.71
SVM RNA-class probability 0.793698
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16267726 103 - 22422827
------GUGUGUAUACAUGUUUCUGGGCAAGUU--CAGCUUGUACAUCUCCCAUUUUCCAUCUCAAUCACUCUCGCUGUAUUUCCCACA-UG-CUUAUUAAAUCACACAUCUC-
------(((((.......((...((((.((((.--((((...................................)))).))))))))..-.)-).........))))).....- ( -17.74, z-score =  -2.66, R)
>droSim1.chrX_random 4279621 109 - 5698898
GUGUGUAUAUAUGUAUAUGUUUCUGGGCAAGUU--CAGCUUGUACAUCUCCCAUUUUCCAUCUCAGUCACUCUCGCUGUAUUUCCCACA-UG-CUUAUUAAAUCACACAUCUC-
(((((.....(((..(((((....(((.((((.--((((..((((....................)).))....)))).))))))))))-))-..))).....))))).....- ( -19.95, z-score =  -2.46, R)
>droSec1.super_17 84724 107 - 1527944
--GUGUGUAUAUGUAUAUGUUUCUGGGCAAGUU--CAGCUUGUACAUCUCCCAUUUUCCAUCUCAGUCACUCUCGCUGUAUUUCCCACA-UG-CUUAUUAAAUCACACAUCUC-
--(((((.....(((...((...((((.((((.--((((..((((....................)).))....)))).))))))))..-.)-).))).....))))).....- ( -19.55, z-score =  -2.44, R)
>droEre2.scaffold_4690 7918949 99 + 18748788
----------GUAUGUAUGUUUCUGGACAAGUU--CAGCUUGUACACAUCCCAUUUUCCAUCUCACUUAGUCUCGAAGUAUUUCCCACA-UG-CUUAUUAAAUCACACAUCUC-
----------(((((((((((((.((((((((.--.((..((................)).)).)))).)))).))))))).....)))-))-)...................- ( -11.59, z-score =  -0.31, R)
>droYak2.chrX 10387422 99 - 21770863
----------UUUUGUAUGUUUCUGGGCAAGUU--CAGCUUGUACAUCUCCCAUUUUCCACCUCACUCACUCUCGCUGUGAUUCCCACA-CA-CUUAUUUAAUCACACAUCUC-
----------...((((((...(((((....))--)))..))))))............................(.(((((((......-..-.......)))))))).....- ( -11.06, z-score =  -0.54, R)
>droAna3.scaffold_13186 45413 104 + 49402
-----UGCUUAACAAUAGUUUUUUGUUUGUGUU--UA-UGUAUGCAUAAACGUUUUUGUUUUUCAA-AAUUCGCACUUCGUCGCUCACA-AAUCUUGUUAUCAGAAAAACAUUG
-----.((..(((((.......))))).))(((--((-((....))))))).....((((((((..-.....((........))..(((-.....))).....))))))))... ( -16.60, z-score =  -0.49, R)
>droGri2.scaffold_15203 7002556 105 - 11997470
--------UUACAUACAGACAUACAUAUGUGCUAAUAGCUCACAUGUAUUUGUUUUCUUUUAUUAUAAAUUCACACACGUUCGUUUUUGCCAGCAUUUAAUCACUGAUUUUUU-
--------.......(((..((((((.((.((.....)).)).)))))).............................(((.((....)).))).........))).......- ( -12.40, z-score =  -0.42, R)
>consensus
_________UAUAUAUAUGUUUCUGGGCAAGUU__CAGCUUGUACAUCUCCCAUUUUCCAUCUCAAUCACUCUCGCUGUAUUUCCCACA_UG_CUUAUUAAAUCACACAUCUC_
.......................((..(((((.....)))))..)).................................................................... ( -5.55 =  -4.19 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 16,267,795 – 16,267,897
Length 102
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 67.93
Shannon entropy 0.59476
G+C content 0.35949
Mean single sequence MFE -27.40
Consensus MFE -12.00
Energy contribution -11.98
Covariance contribution -0.02
Combinations/Pair 1.56
Mean z-score -1.92
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.68
SVM RNA-class probability 0.960084
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16267795 102 - 22422827
GCUGUGUUUGCUUGUAAGGAAAUACUU-------CACUUUGCCGAGCAUAAUCCUACAAACGUAUGCAUAUGUACGUGUG------UAUACAUGUUUCUGGGCAAGUUCAGCUUG
((((.....((((((..(((((((...-------.....(((...))).............((((((((((....)))))------))))).)))))))..)))))).))))... ( -31.00, z-score =  -2.36, R)
>droSim1.chrX_random 4279690 115 - 5698898
GCUGUGUUCGCUUGUAAGGAAAUACUUUAUAAUACACUUUGCCGAGCAUAAUCCUACCAACGUAUGCAUAUGUACGUGUGUAUAUAUGUAUAUGUUUCUGGGCAAGUUCAGCUUG
(((((((....((((((((.....)))))))).))))......((((.....((((..(((((((((((((((((....)))))))))))))))))..))))...)))))))... ( -36.90, z-score =  -3.55, R)
>droSec1.super_17 84793 113 - 1527944
GCUGUGUUUGCUUGUAAGGAAAUACUUUAUAAUACACUUUGCCGAGCAUAAUCCUACCAACGUAUGCAUAUGUACGUGUG--UAUAUGUAUAUGUUUCUGGGCAAGUUCAGCUUG
((((.....((((((..(((((((...((((((((((..(((...)))...........((((((......)))))))))--))).))))..)))))))..)))))).))))... ( -32.30, z-score =  -2.09, R)
>droEre2.scaffold_4690 7919018 97 + 18748788
GAUGUGUCUGCUUUUAAGGAAAUACUU-------CACUAUGCCGAACAUAAUCCUACAAACAUAUAUGUACA-AUGUAUG----------UAUGUUUCUGGACAAGUUCAGCUUG
((.((((.(.((....)).).)))).)-------).....((.((((....(((.(((.((((((((.....-)))))))----------).)))....)))...)))).))... ( -21.70, z-score =  -1.78, R)
>droYak2.chrX 10387491 98 - 21770863
GAUGUGUUUGCUUGUAAGGAAAUACUU-------CACUUUGCCGAACAUAAUCCUACAAACAUGUUUGUAUGUACUUUUG----------UAUGUUUCUGGGCAAGUUCAGCUUG
((.((((((.((....)).)))))).)-------)..(((((((((((((....((((.(((....))).))))......----------)))))))...))))))......... ( -22.80, z-score =  -1.37, R)
>droAna3.scaffold_13186 45483 106 + 49402
UAUGUAUGUAUAUGUACUAACAUACGUACAUAUCUACAAUAUUAAUUCCAGUUCU---GGUAUAUUUUGAGACACUGCUU-----AACAAUAGUUUUUUGUUUGUGUUUAUGUA-
(((((((((((.(......).)))))))))))..((((.........(((....)---)).........((((((.....-----(((((.......))))).)))))).))))- ( -19.70, z-score =  -0.37, R)
>consensus
GAUGUGUUUGCUUGUAAGGAAAUACUU_______CACUUUGCCGAGCAUAAUCCUACAAACAUAUGCAUAUGUACGUGUG______U_UAUAUGUUUCUGGGCAAGUUCAGCUUG
((((.....((((((..(((((((...................((......))......((((((......))))))...............)))))))..)))))).))))... (-12.00 = -11.98 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:25 2011