| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,267,442 – 16,267,533 |
| Length | 91 |
| Max. P | 0.914064 |
| Location | 16,267,442 – 16,267,533 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.93 |
| Shannon entropy | 0.22306 |
| G+C content | 0.39068 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -18.36 |
| Energy contribution | -19.60 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16267442 91 - 22422827 --------GCAUACAUACAUACACCCACAGAUGUAUGAAAUCACGUAAUGCAAGCCAUGCAUUCGUAUGCUCUUUGCGUACAUACAUACAUCAUUGUGC --------.................((((((((((((.......(.((((((.....)))))))((((((.....))))))...))))))))..)))). ( -26.10, z-score = -2.86, R) >droSim1.chrX_random 4279339 91 - 5698898 --------GCAUACAUACAUACACCCACAGAUGUAUGAAAUCACGUAAUGCAAGCCAUGCAUUCGUAUGCUCUUUGCGUACAUACAUACAUCAUUGUGC --------.................((((((((((((.......(.((((((.....)))))))((((((.....))))))...))))))))..)))). ( -26.10, z-score = -2.86, R) >droSec1.super_17 84442 91 - 1527944 --------GCAUACAUACAUACACCCACAGAUGUAUGAACUCACGUAAUGCAAGCCAUGCAUUCGUAUGCUCUUUGCGUACAUACAUACAUCAUUGUGC --------.................((((((((((((.......(.((((((.....)))))))((((((.....))))))...))))))))..)))). ( -26.10, z-score = -2.88, R) >droEre2.scaffold_4690 7918675 86 + 18748788 ------------GCAUACAGACACCUACAGAUGUAUGAAAUCACGUAAUGCAAG-CAUGAAUUUGUAUUCUCUUUGCGAACAUACAUACAUCAAAGAGC ------------.................((((((((......(((((((((((-......)))))))......))))......))))))))....... ( -14.90, z-score = -0.58, R) >droYak2.chrX 10387135 97 - 21770863 GCAUACAUACAUACAUAGAUACA-UCACAGAUGUAUAAAAUCACGUAAUGCAAG-CAUGCAUUUGUAUGCUCUUUGCGUUCAUACAUACAUCAUUGUGC (((((............((....-))...(((((((......((((((....((-(((((....)))))))..))))))......)))))))..))))) ( -24.20, z-score = -1.71, R) >consensus ________GCAUACAUACAUACACCCACAGAUGUAUGAAAUCACGUAAUGCAAGCCAUGCAUUCGUAUGCUCUUUGCGUACAUACAUACAUCAUUGUGC .........................((((((((((((.........((((((.....)))))).((((((.....))))))...))))))))..)))). (-18.36 = -19.60 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:23 2011