| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,243,361 – 16,243,425 |
| Length | 64 |
| Max. P | 0.972692 |
| Location | 16,243,361 – 16,243,425 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 57.29 |
| Shannon entropy | 0.61422 |
| G+C content | 0.44985 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -12.03 |
| Energy contribution | -11.27 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16243361 64 + 22422827 UCUCUGAGUUCCUUACCUUUGGUAGGGGGAAACUGCAGAGUCGAUUAAAGGCUCGAUUGACCAA ..(((((((((((((((...))))))))...))).))))(((((((........)))))))... ( -19.70, z-score = -1.27, R) >droSec1.super_43 270810 64 - 327307 UCUCUGAGUUUUUUACUACUGGUGCGAAAAAACUGCAGAGAAUUUCGAAAAACAAAACAACCAA ((((((((((((((..((....))..)))))))).))))))....................... ( -13.30, z-score = -2.34, R) >droAna3.scaffold_13770 628024 54 - 865660 AACCUGAGUCUCUUACCACAGG--GGGGAAAACGUCAGGGU--------GUCUCGAUGGACCAA ..(((((((.(((..((...))--..)))..)).)))))(.--------((((....))))).. ( -13.70, z-score = 0.85, R) >consensus UCUCUGAGUUUCUUACCACUGGU_GGGGAAAACUGCAGAGU___U__AAGACUCGAUCGACCAA .(((((..(((((((((...)))))))))......)))))........................ (-12.03 = -11.27 + -0.77)
| Location | 16,243,361 – 16,243,425 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 57.29 |
| Shannon entropy | 0.61422 |
| G+C content | 0.44985 |
| Mean single sequence MFE | -15.07 |
| Consensus MFE | -8.33 |
| Energy contribution | -8.00 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.956033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16243361 64 - 22422827 UUGGUCAAUCGAGCCUUUAAUCGACUCUGCAGUUUCCCCCUACCAAAGGUAAGGAACUCAGAGA ........((((........))))(((((.((((((..(((.....)))...))))))))))). ( -17.90, z-score = -1.96, R) >droSec1.super_43 270810 64 + 327307 UUGGUUGUUUUGUUUUUCGAAAUUCUCUGCAGUUUUUUCGCACCAGUAGUAAAAAACUCAGAGA ......((((((.....))))))((((((.((((((((.((.......)))))))))))))))) ( -15.10, z-score = -2.20, R) >droAna3.scaffold_13770 628024 54 + 865660 UUGGUCCAUCGAGAC--------ACCCUGACGUUUUCCCC--CCUGUGGUAAGAGACUCAGGUU ...(((......)))--------..(((((.(((((...(--(....))...)))))))))).. ( -12.20, z-score = 0.23, R) >consensus UUGGUCAAUCGAGACUU__A___ACUCUGCAGUUUUCCCC_ACCAGUGGUAAGAAACUCAGAGA ........................(((((.((((((..((.......))...))))))))))). ( -8.33 = -8.00 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:23 2011