| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,227,763 – 16,227,860 |
| Length | 97 |
| Max. P | 0.639404 |
| Location | 16,227,763 – 16,227,860 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 97.11 |
| Shannon entropy | 0.05210 |
| G+C content | 0.40165 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -27.40 |
| Energy contribution | -28.20 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16227763 97 - 22422827 UCGUAUCGUAUCGCUUGUGUUUUGUUGGUGUGGUAUGGUAUAUAUGCUAUACAGUACACAGUACACAGCACACAGUAUGGUAUCGUAUCAAUGCGAA ...((((((((.(..((((((.(((..(((((((((((((....))))))))..)))))...))).))))))).))))))))(((((....))))). ( -30.20, z-score = -1.39, R) >droSim1.chrX 12520522 97 - 17042790 UCGUAUCGUAUCGCUUGUGUUUUGUUGGUGUGGUAUGGUAUAUAUGCUAUACAGUACACAGUACACAGCACACAGUAUGGUAUCGUAUCAAUGCGAA ...((((((((.(..((((((.(((..(((((((((((((....))))))))..)))))...))).))))))).))))))))(((((....))))). ( -30.20, z-score = -1.39, R) >droSec1.super_17 54778 97 - 1527944 UCGUAUCGUAUCGCUUGUGUUUUGUUGGUGUGGUAUGGUAUAUAUGCUAUACAGUACACAGUACACAGCACACAGUAUGGUAUCGUAUCAAUGCGAA ...((((((((.(..((((((.(((..(((((((((((((....))))))))..)))))...))).))))))).))))))))(((((....))))). ( -30.20, z-score = -1.39, R) >droYak2.chrX 10358682 97 - 21770863 UCGUAUCGUAUCGCUUGUGUUUUGUUGGUGUGGUAUGGUAUAUAUGCUAUACAGUACACAGUACACAGCACACAGUAUGGUAUCGUAUCAAUGCGAA ...((((((((.(..((((((.(((..(((((((((((((....))))))))..)))))...))).))))))).))))))))(((((....))))). ( -30.20, z-score = -1.39, R) >droEre2.scaffold_4690 7888146 90 + 18748788 UCGUAUCGUAUCGCUUGUGUUUUGUUGGUGUGGUAUGGUAUAUAUGCUAU-------ACAGUACACAGCACACAGUAUGGUAUCGUAUCAAUGCGAA ...((((((((.(..((((((.(((..((((((((((.....))))))))-------))...))).))))))).))))))))(((((....))))). ( -28.70, z-score = -1.83, R) >consensus UCGUAUCGUAUCGCUUGUGUUUUGUUGGUGUGGUAUGGUAUAUAUGCUAUACAGUACACAGUACACAGCACACAGUAUGGUAUCGUAUCAAUGCGAA ...((((((((.(..((((((.(((..((((.((((((((....))))))))...))))...))).))))))).))))))))(((((....))))). (-27.40 = -28.20 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:20 2011