| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,185,564 – 16,185,658 |
| Length | 94 |
| Max. P | 0.623743 |
| Location | 16,185,564 – 16,185,658 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.86 |
| Shannon entropy | 0.27638 |
| G+C content | 0.50365 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -20.95 |
| Energy contribution | -21.19 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16185564 94 - 22422827 GUCGGCUUUUGAGCUAUCAAAGCCA----GACUGACUGGUACACAAGAACACAAACAGGUGACCCCAAAUUGCCAGGAGUUAGCCCGACCGACCAACC-------------- (((((((((.((....)))))))).----((((..((((((........(((......))).........)))))).)))).....))).........-------------- ( -23.13, z-score = -1.37, R) >droEre2.scaffold_4690 7846560 108 + 18748788 GUCGGCUUUUGAGCUUCCAAAGCCA----UACUGACUGGUACACGAAAACACAAACAGGUGACCCCAAAUUGCCAGGAGUUAGCCCGACCAAUAAUGCACCUUACAGUAACC ...((((((.(.....).)))))).----(((((...(((.((......(((......))).......((((...((.(....)))...))))..)).)))...)))))... ( -22.20, z-score = -0.44, R) >droYak2.chrX 10331186 112 - 21770863 GUCGGCUUUUGAGCUUUCAAAGCCAGACUGACUGACUGGCACACAAAAACACAAACAGGUGACCCCAAAUUGCCAGGAGUUAGCCCGACCAAUAAUGCACCUUACAGGAAAC (((((..((((.(((.....)))))))((((((..((((((........(((......))).........)))))).)))))).)))))..........((.....)).... ( -29.13, z-score = -1.98, R) >droSec1.super_17 12453 90 - 1527944 GUCGGCUUUUGAGCUUUCAAAGCCA----GACUGACUGGUACACAAGAACACAAACAGGUGACCCCAAAUGGCCAGGAGUUAGCCCGACCAACC------------------ (((((((((.(......))))))).----((((..(((((.........(((......)))..........))))).)))).....))).....------------------ ( -21.91, z-score = -0.37, R) >droSim1.chrX 12488725 90 - 17042790 GUCGGCUUUUGAGCUUUCAAAGCCA----GACUGACUGGUACACAAGAACACAAACAGGUGACCCCAAAUUGCCAGGAGUUUGCCCGACCAACC------------------ (((((.(((((......))))).((----((((..((((((........(((......))).........)))))).)))))).))))).....------------------ ( -22.93, z-score = -0.92, R) >consensus GUCGGCUUUUGAGCUUUCAAAGCCA____GACUGACUGGUACACAAGAACACAAACAGGUGACCCCAAAUUGCCAGGAGUUAGCCCGACCAACCA__C______________ (((((((((.(......))))))).....((((..((((((........(((......))).........)))))).)))).....)))....................... (-20.95 = -21.19 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:14 2011