Locus 14901

Sequence ID dm3.chrX
Location 16,161,281 – 16,161,429
Length 148
Max. P 0.772594
window20530 window20531

overview

Window 0

Location 16,161,281 – 16,161,376
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 86.71
Shannon entropy 0.25362
G+C content 0.43836
Mean single sequence MFE -28.93
Consensus MFE -18.91
Energy contribution -19.72
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -1.99
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.18
SVM RNA-class probability 0.582860
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16161281 95 + 22422827
--GUUGGAUAAACAGCGUUCGGAAGAGCUCGUCUUAGAGCUGCUGUUCCGGA--AACGAUUGUUUAAAAUUCCUUAGUUUGGCAGCUUAGAGCGACAAA
--((((......))))((((....))))(((.(((.((((((((....((..--..))........((((......)))))))))))).)))))).... ( -31.50, z-score =  -2.42, R)
>droAna3.scaffold_13137 108089 93 - 1373759
---GCUGACCAACAGGGUUCGGAAGAGUUCGCUUCCGAACAACUAUUCUAAAUCAUUAAUUGUUUUAAAUUCUU---UUUGGCAGCUUAGAGCGACAAA
---((((.((((.((((((((((((......)))))))))........((((.((.....)).))))....)))---.))))))))............. ( -26.80, z-score =  -3.34, R)
>droEre2.scaffold_4690 7822807 95 - 18748788
--GUUGGAUAAACAGCGUUCGGAAGAGCUCGUGUUGGAGCUGCUGUUCCGGA--AACGAUUGUUUAAAAUUCCUUAGUUUGGCAGCUUAGAGCGACAAA
--((((......))))((((....))))((((....((((((((....((..--..))........((((......))))))))))))...)))).... ( -30.80, z-score =  -2.10, R)
>droYak2.chrX 10304897 97 + 21770863
GUGGUGGAUAAACAGCGUUCGGAAUAGCUCGUCUUUGAGCAGCAGUUCCGGA--AACGAUUGUUUCAAAUUCCUUAGUUUGGCAGCUUAGAGCGACAAA
((.((((((((((((((((((((((.(((((....)))))....))))))).--.))).))))))...))))((.(((......))).)).)).))... ( -24.20, z-score =  -0.05, R)
>droSec1.super_47 209505 95 + 216421
--GUUGGAUAAACAGCGUUCGGAAGAGCUCGUCAUAGAGCUGCUGUUCCGGA--AACGAUUGUUUAAAAUUCCUUAGUUUGGCAGCUUAGAGCGACAAA
--((((......))))((((....))))((((..(.((((((((....((..--..))........((((......)))))))))))))..)))).... ( -28.80, z-score =  -1.80, R)
>droSim1.chrX_random 4204541 95 + 5698898
--GUUGGAUAAACAGCGUUCGGAAGAGCUCGUCUUGGAGCUGCUGUUCCGGA--AACGAUUGUUUAAAAUUCCUUAGUUUGGCAGCUUAGAGCGACAAA
--((((......))))((((....))))(((.(((.((((((((....((..--..))........((((......)))))))))))).)))))).... ( -31.50, z-score =  -2.22, R)
>consensus
__GUUGGAUAAACAGCGUUCGGAAGAGCUCGUCUUAGAGCUGCUGUUCCGGA__AACGAUUGUUUAAAAUUCCUUAGUUUGGCAGCUUAGAGCGACAAA
.....(((((((((((((((((((.(((((......)))))....))))))....))).)))))))....)))....((((...((.....))..)))) (-18.91 = -19.72 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 16,161,332 – 16,161,429
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 90.24
Shannon entropy 0.19284
G+C content 0.44555
Mean single sequence MFE -23.93
Consensus MFE -22.11
Energy contribution -22.20
Covariance contribution 0.09
Combinations/Pair 1.09
Mean z-score -1.28
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.64
SVM RNA-class probability 0.772594
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16161332 97 - 22422827
ACCAGCUUCCCAAAGCCUGAUUACGAAAUCCAGUGUCCUGGGGAGUGGCCUCAUUUGUCGCUCUAAGCUGCCAAACUAAGGAAUUUUAAACAAUCGU
..((((((((((..((((((((....))).))).))..))))(((((((.......))))))).))))))((.......))................ ( -24.80, z-score =  -1.19, R)
>droAna3.scaffold_13137 108141 91 + 1373759
ACCAGCUUCCUGUAAACUGCGUAGAAA---CAGAGUUAAAGGGAGUUGCCUCAUUUGUCGCUCUAAGCUGCCAA---AAAGAAUUUAAAACAAUUAA
..(((((((((...((((..((....)---)..))))..))))))))).....((((.(((.....)).).)))---)................... ( -16.40, z-score =   0.11, R)
>droEre2.scaffold_4690 7822858 97 + 18748788
ACCAGCUUCCCAAAACCUGAUUACCAAAUCCAGUGUCGUGGGGAGUGGCCUCAUUUGUCGCUCUAAGCUGCCAAACUAAGGAAUUUUAAACAAUCGU
..((((((((((..((((((((....))).))).))..))))(((((((.......))))))).))))))((.......))................ ( -25.60, z-score =  -1.90, R)
>droYak2.chrX 10304950 97 - 21770863
ACCAGCUUCCCAAAACCUGAUUACGAAAUCCAGUGUCGUGGGGAGUGGCCUCAUUUGUCGCUCUAAGCUGCCAAACUAAGGAAUUUGAAACAAUCGU
..((((((((((..((((((((....))).))).))..))))(((((((.......))))))).))))))((.......))................ ( -25.60, z-score =  -1.38, R)
>droSec1.super_47 209556 97 - 216421
ACCAGCUUCCCAAAACCUGAUUACGAAAUCCAGUGUCGUGGGGAGUGGCCUCAUUUGUCGCUCUAAGCUGCCAAACUAAGGAAUUUUAAACAAUCGU
..((((((((((..((((((((....))).))).))..))))(((((((.......))))))).))))))((.......))................ ( -25.60, z-score =  -1.67, R)
>droSim1.chrX_random 4204592 97 - 5698898
ACCAGCUUCCCAAAACCUGAUUACGAAAUCCAGUGUCGUGGGGAGUGGCCUCAUUUGUCGCUCUAAGCUGCCAAACUAAGGAAUUUUAAACAAUCGU
..((((((((((..((((((((....))).))).))..))))(((((((.......))))))).))))))((.......))................ ( -25.60, z-score =  -1.67, R)
>consensus
ACCAGCUUCCCAAAACCUGAUUACGAAAUCCAGUGUCGUGGGGAGUGGCCUCAUUUGUCGCUCUAAGCUGCCAAACUAAGGAAUUUUAAACAAUCGU
..((((((((((..(((((...........))).))..))))(((((((.......))))))).))))))........................... (-22.11 = -22.20 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:10 2011