| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,153,955 – 16,154,066 |
| Length | 111 |
| Max. P | 0.648924 |
| Location | 16,153,955 – 16,154,066 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 86.08 |
| Shannon entropy | 0.19242 |
| G+C content | 0.36673 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -16.57 |
| Energy contribution | -19.23 |
| Covariance contribution | 2.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16153955 111 - 22422827 -ACACAUAGUGACGAAGGACACCGAUAGUAGC------UCUAGCCAUUCAUAUAAGAUAAUGAUAUAUUUUUUCGUAAAGCGAAAUAAUAAAUAAGUAAGUACUCUUCCGUCACAAAU -.......((((((.((((...........((------....))...((((........))))..((((.(((((.....))))).)))).............)))).)))))).... ( -19.20, z-score = -1.50, R) >droSec1.super_47 202371 116 - 216421 AUUCCUUAGUGACGAAGGACACCGAUAGGAGCAGGAGCUCUAGCCAUUCAUAUAAAAGAAUGAUCAAUUGGU--CUAGAGCGAAAUAAUAAGUAAGUAAGUACUCUUCCGUCACAAAU ........((((((.((((..((....)).......((((((((((.((((........)))).....))).--)))))))......................)))).)))))).... ( -31.00, z-score = -3.01, R) >droSim1.chrX 12474150 116 - 17042790 AUUCCUUAGUGACGAAGGACACCGAUAGGAGCAGGAGUUCUAGCCAUUCAUAUAAGAGAAUGAUCUAUUGGU--GUAGAGCGAAAUAAUAAGUAAGUAAGAACUCUUCCGUCACAAAU ........(((((((((((((((((((((.((.((....)).))(((((........))))).)))))))))--))...((..........))..........)))).)))))).... ( -31.60, z-score = -3.00, R) >consensus AUUCCUUAGUGACGAAGGACACCGAUAGGAGCAGGAG_UCUAGCCAUUCAUAUAAGAGAAUGAUCUAUUGGU__GUAGAGCGAAAUAAUAAGUAAGUAAGUACUCUUCCGUCACAAAU ........((((((.((((.(((((((((.((.((....)).))(((((........))))).))))))))).......................((....)))))).)))))).... (-16.57 = -19.23 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:08 2011