| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,508,107 – 11,508,198 |
| Length | 91 |
| Max. P | 0.832960 |
| Location | 11,508,107 – 11,508,198 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.59938 |
| G+C content | 0.36238 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -9.38 |
| Energy contribution | -8.56 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11508107 91 + 23011544 ------AAAAGCGGCGUUAUGUUAAUGUA----AAUAUAGUCCAACAUAAUGCCCGAUUUACGGAAAAAC-UGCAGAGCGAAUGUACCUUGAAAUACUUACG- ------....(((((((((((((..(((.----...)))....)))))))))))...(((.(((.....)-)).))))).......................- ( -16.10, z-score = -0.60, R) >droSim1.chr2L 11324000 91 + 22036055 ------AAGAGCGGCGUUAUGUUAAUGUA----AAUAUAGUCCAACAUAAUGCCCGAUUUACGGAAAAAC-UGCAGAGCGAAUGUACCUUGAAAUACUUACG- ------....(((((((((((((..(((.----...)))....)))))))))))...(((.(((.....)-)).))))).......................- ( -16.10, z-score = -0.42, R) >droYak2.chr2L 7914644 92 + 22324452 ------AAGGGCGGCGUUAUGUUAAUGUA----AAUAUAGUCCAGCAUAAUGCCCAAUUUACAGAAAAACCUGCAGAGCGAAUGUACCUUGAAAUACUUACG- ------(((((((((((((((((..(((.----...)))....)))))))))))...(((.(((......))).)))......)).))))............- ( -18.60, z-score = -0.76, R) >droEre2.scaffold_4929 12716989 92 - 26641161 ------AAAAGCGGCGUUAUGUUAAUGUA----AAUAUAGUCCAACAUAAUGCCCAAUUUACGCAAAAACCUGCAGAGCGAAUGUACCUUGAAAUACUUACG- ------....(((((((((((((..(((.----...)))....)))))))))))........(((......)))...)).......................- ( -18.30, z-score = -1.78, R) >droSec1.super_3 6905226 91 + 7220098 ------AAGAGCGGCGUUAUGUUAAUGUA----AAUAUAGUCCAACAUAAUGCCCGAUUUAGGGAAAAAC-UGCAGAGCGAAUGUACCUUGAAAUACUUACG- ------(((.(.(((((((((((..(((.----...)))....))))))))))))..(((((((......-((((.......)))))))))))...)))...- ( -19.30, z-score = -1.37, R) >droAna3.scaffold_12916 9228862 83 - 16180835 ------AAGAAAGGCAUUGUGUUAAUGUA----AAUAUAGGUCGACACAAUGCCCGA---------AACGUUGAAGAGCGAAUGUACCUUGAAAUACUGGCG- ------......((((((((((..((.((----....)).))..))))))))))...---------..((((....))))......................- ( -20.90, z-score = -2.45, R) >dp4.chr4_group3 6977139 93 + 11692001 ------AAGCGUGGCAUUAUGUCUUUGUA----AAUAUAGGCCGACAUAAUGCCCGAUAUAGCCAACAAUUUGAAGAGCGAAUGUACCUUGAAAUACUUUUUG ------...((.((((((((((((((((.----...)))))..)))))))))))))............((((.(((.(........)))).))))........ ( -20.00, z-score = -1.55, R) >droPer1.super_1 8426835 93 + 10282868 ------AAGCGUGGCAUUAUGUCUUUGUA----AAUAUAGGCCGACAUAAUGCCCGAUAUAGCCAACAAUUUGAAGAGCGAAUGUACCUUGAAAUACUUUUUG ------...((.((((((((((((((((.----...)))))..)))))))))))))............((((.(((.(........)))).))))........ ( -20.00, z-score = -1.55, R) >droWil1.scaffold_181038 11547 91 + 637489 ------AAGUAAGACAUUAUGUUUUUGUA----UAUAUAGUUCAAUAUAAUGCGAAA-AAACAAACCUUUUAACAGAGCGAAUGUACCUUAAAAUACUUUUG- ------...(((((((((...((((((((----(.((((......))))))))))))-)......((((......))).))))))..))))...........- ( -10.50, z-score = -0.11, R) >droVir3.scaffold_12963 18166916 93 - 20206255 UAAGUAAAGCAAGCCAUUGUGUUAUUGUA----CAUAUAGAUCAACACAUUGUCUUUCCUAGCGACCAUU-UACAGAGCAUUCCUAAACACGAAUGUG----- ...(((((....((((.((((((..(.((----....)).)..)))))).)).........)).....))-)))...((((((........)))))).----- ( -14.10, z-score = -0.35, R) >droMoj3.scaffold_6500 5180346 91 - 32352404 ------AAGCAAGUCAUUAUGUUAUUGUA----UAUAUAGACCAACAUAAUGUCUUUCCCAGCGAACAUU-GACCGAGCAAGUGUACCUAGAAAUAUCUAUU- ------..(((((.(((((((((..(.((----....)).)..))))))))).))).....))..(((((-.........)))))...((((....))))..- ( -12.60, z-score = -0.47, R) >droGri2.scaffold_15126 7353767 102 - 8399593 UACGUUAAGCCAGCCAUUGUGUUAUUGUAUAUAGAUAAAGAUCAACAUAAUGUGUUUCCCAGCGAAAACUUUACAGAGCGAAUGUACCUUGAAAUAUUUAUU- ..((((.....(((((((((((((((.(((....)))..))).))))))))).)))....))))...............((((((........))))))...- ( -12.30, z-score = 0.58, R) >consensus ______AAGAGAGGCAUUAUGUUAAUGUA____AAUAUAGUCCAACAUAAUGCCCGAUUUAGCGAAAAAU_UGCAGAGCGAAUGUACCUUGAAAUACUUACG_ ............(((((((((((..((((......))))....))))))))).))................................................ ( -9.38 = -8.56 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:54 2011