| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,153,454 – 16,153,546 |
| Length | 92 |
| Max. P | 0.865829 |
| Location | 16,153,454 – 16,153,546 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.58 |
| Shannon entropy | 0.24145 |
| G+C content | 0.42122 |
| Mean single sequence MFE | -13.44 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.54 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16153454 92 - 22422827 -CCAAAAAUCAGCUCACUCCUUCGAUUCUGAGAGCUAGCUCUACAUACAUACAUAUGUAUUUGGCCCGUUUGUUUGUCCACAAAAUUAUUCGC -(((((....((((..(((..(((....))))))..)))).((((((......)))))))))))....(((((......)))))......... ( -13.60, z-score = -0.52, R) >droSim1.chrX 12473686 71 - 17042790 ----------AGCUCACUCCUUCGAUUCUGUGAGCU------------CUACAUAUGUAUUUGCCCCGUUUGUUUGUCCACAAAAUUAUUCGG ----------(((((((............)))))))------------.................(((....((((....))))......))) ( -13.00, z-score = -2.12, R) >droSec1.super_47 201909 71 - 216421 ----------AGCUCACUCCUGCGAUUCUGUGAGCU------------CUACAUAUGUAUUUGCCCCGUUUGUUUGUCCACAAAAUUAUUCGG ----------(((((((............)))))))------------.................(((....((((....))))......))) ( -13.00, z-score = -1.50, R) >droYak2.chrX 10297822 80 - 21770863 -CCAAAAAUCAGCUCACUCCUUCGCUUCUGUGAGCU------------CUACAUAUGUAUUUGCCCCGUUUGUUUGUCCACAAAAUUAUUCGG -.((((....(((((((............)))))))------------.(((....)))))))..(((....((((....))))......))) ( -13.80, z-score = -2.37, R) >droEre2.scaffold_4690 7813311 81 + 18748788 CCCAAAAAUCAGCUCACUCCUUCGAUUCUGUGAGCU------------CUACAUAUGUAUUUGCCCCGUUUGUUUGUCCACAAAAUUAUUCGG ..((((....(((((((............)))))))------------.(((....)))))))..(((....((((....))))......))) ( -13.80, z-score = -2.24, R) >consensus _CCAAAAAUCAGCUCACUCCUUCGAUUCUGUGAGCU____________CUACAUAUGUAUUUGCCCCGUUUGUUUGUCCACAAAAUUAUUCGG ..........(((((((............))))))).............................(((....((((....))))......))) (-11.14 = -11.54 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:08 2011