| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,143,080 – 16,143,146 |
| Length | 66 |
| Max. P | 0.865412 |
| Location | 16,143,080 – 16,143,146 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 75.90 |
| Shannon entropy | 0.47006 |
| G+C content | 0.39126 |
| Mean single sequence MFE | -15.40 |
| Consensus MFE | -8.82 |
| Energy contribution | -9.72 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16143080 66 - 22422827 AAAGAUAUUCGGUAGAAAAUUGUAUGUAAAUACCCAAAGGGU-AUUAGUCUGCUGACCGAAAAACCA .......((((((........(((..(.(((((((...))))-))).)..)))..))))))...... ( -14.60, z-score = -2.35, R) >droAna3.scaffold_12943 3149623 67 + 5039921 AUAUUUGCUUAGAAUAAUGUUGUAUGUGCCUAUCCAAAUUGCGCUGGGCAUCAUGACUCUAAAACUA ........(((((...(((.(((..((((...........))))...))).)))...)))))..... ( -11.90, z-score = -0.55, R) >droEre2.scaffold_4690 7803034 62 + 18748788 AAACAUUUU-GGCAAGAAAUUGCAUGUAAACACCCAGAGGGC--U--GUCUGCUGGCCGAAGAACCA .....((((-(((((....)).((.(((.((((((...))).--)--)).))))))))))))..... ( -14.80, z-score = -0.32, R) >droYak2.chrX 10288524 67 - 21770863 AAAGAUUUUUGGUAGAAAAUUGUAUGUAAACACCCAGAGGGUGUUAAGUCUGCUGACCGAAAAACCA .....((((((((...............(((((((...))))))).((....)).)))))))).... ( -15.50, z-score = -1.89, R) >droSec1.super_47 191800 65 - 216421 AAAGAUUUUCGGUAGAAAAUUGUAUGUAAAUACCCAGGGGGC--UAAGUCUGCUGACCGAAAAACCA .....((((((((........((((....)))).(((.((((--...)))).))))))))))).... ( -17.80, z-score = -2.27, R) >droSim1.chrX 12463672 65 - 17042790 AAAGAUUUUCGGUAGAAAAUUGUAUGUAAAUACCCAGGGGGC--UAAGUCUGCUGACCGAAAAACCA .....((((((((........((((....)))).(((.((((--...)))).))))))))))).... ( -17.80, z-score = -2.27, R) >consensus AAAGAUUUUCGGUAGAAAAUUGUAUGUAAAUACCCAGAGGGC__UAAGUCUGCUGACCGAAAAACCA .....((((((((........((((....)))).(((.((((.....)))).))))))))))).... ( -8.82 = -9.72 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:02 2011