| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,127,853 – 16,127,922 |
| Length | 69 |
| Max. P | 0.579552 |
| Location | 16,127,853 – 16,127,922 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 73.22 |
| Shannon entropy | 0.52099 |
| G+C content | 0.46983 |
| Mean single sequence MFE | -19.04 |
| Consensus MFE | -9.05 |
| Energy contribution | -9.90 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16127853 69 + 22422827 UUUAUUUUGUUUCGCUGUAUUAAUGGGUUGACUG--CGAUU-------GCGAUUGCGACCCAUUACCGUGGGGUAUUC .......((..((((.(((...((((((((....--((...-------.))....))))))))))).))))..))... ( -19.40, z-score = -1.95, R) >droSim1.chrX_random 4172173 69 + 5698898 UUUAUUUUGUUUCGCUGUAUUAAUGGGUUGGCUG--CGAUU-------GCGAUUGCGACCCAUUACCGUGGGGUAUUC .......((..((((.(((...((((((((.(..--((...-------.))...)))))))))))).))))..))... ( -18.60, z-score = -1.18, R) >droSec1.super_47 176298 69 + 216421 UUUAUUUUGUUUCGCUGUAUUAAUGGGUUGGCUG--CGAUU-------GCGAUUGCGACCCAUUACCGUGGGGUAUUC .......((..((((.(((...((((((((.(..--((...-------.))...)))))))))))).))))..))... ( -18.60, z-score = -1.18, R) >droYak2.chrX 10266561 76 + 21770863 UUUAUUUUGUUUCGCUGUAUUAAUGGGUUGACUG--CGAUUUCCAAUUGCUAUUGCGACCCAUUACCGUGGGGUAUUC .......((..((((.(((...((((((((...(--((((.....))))).....))))))))))).))))..))... ( -21.80, z-score = -2.72, R) >droEre2.scaffold_4690 7788152 59 - 18748788 UCUAUUUUGUUUCGCUGUAU-AAUGGGUUGAUUG--CGAUU-------------GCGACCCAUUACCGUGGGGUA--- .........(..(((.(((.-.((((((((....--.....-------------.))))))))))).)))..)..--- ( -16.50, z-score = -1.51, R) >droAna3.scaffold_13260 115722 64 - 2125536 -UUUGUGUGUUCCGAUGUGUUCCUGGCUGGGUUGGCCGACU-------------ACGACCCAUUACCGUGGGAUACAC -..............(((((((((((.(((((((.......-------------.)))))))...))).)))))))). ( -23.10, z-score = -1.85, R) >droPer1.super_22 1234379 75 - 1688296 UUCGUUUGUUUUUGGUGCAUGAACACGGCGGUUGAAGGAGG---GGGGGAGGGCGCGACUCAUUACCGUGGGGUAUUC ......(((((.((...)).)))))(.(((((.....(((.---.(.(.....).)..)))...))))).)....... ( -15.30, z-score = 1.06, R) >consensus UUUAUUUUGUUUCGCUGUAUUAAUGGGUUGGCUG__CGAUU_______GCGAUUGCGACCCAUUACCGUGGGGUAUUC .........((((((.(((...((((((((.........................))))))))))).))))))..... ( -9.05 = -9.90 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:49:00 2011