| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,107,999 – 16,108,085 |
| Length | 86 |
| Max. P | 0.716647 |
| Location | 16,107,999 – 16,108,085 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 95.60 |
| Shannon entropy | 0.07497 |
| G+C content | 0.42227 |
| Mean single sequence MFE | -18.64 |
| Consensus MFE | -18.72 |
| Energy contribution | -18.32 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.95 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16107999 86 + 22422827 UUCCCAAGUGAAAGCUUCCAAGGAGCUUAGCCAACUUUGUGCAAAUCC-AGCUAGAUUUAUUGGUAAGACACACACUGCUUACAAUA ......((((.((((((.....)))))).(((((.((((.((......-.))))))....)))))........)))).......... ( -15.10, z-score = 0.25, R) >droSim1.chrX 12432567 86 + 17042790 UUCCCAAGUGAAAGCUCCCAAGGAGCUUAGCCAACUUUGUGCAAAUCC-AGCUAGAUUUAUUGGUAAGACACACACUGCUUGCAAUA ....(((((..(((((((...))))))).(((((.((((.((......-.))))))....)))))............)))))..... ( -17.90, z-score = -0.23, R) >droSec1.super_47 164741 86 + 216421 UUCCCAAGUGAAAGCUCCCAAGGAGCUUAGCCAACUUUGUGCAAAUCC-AGCUAGAUUUAUUGGUAAGACACACACUGCUUACAAUA ......((((.(((((((...))))))).(((((.((((.((......-.))))))....)))))........)))).......... ( -17.70, z-score = -0.73, R) >droYak2.chrX 10255045 87 + 21770863 UUCCCAAGUGAAAGCUCCCAAGGAGCUUAGCCAACUUUGUGCAAAUCUUGGCCAGAUUUAUUGGUAAGACACACACUACUUGCAAUA ....((((((.(((((((...))))))).........((((....(((((.((((.....)))))))))..)))).))))))..... ( -22.00, z-score = -1.58, R) >droEre2.scaffold_4690 7777111 86 - 18748788 UUCCCAAGUGAAAGCUCCCAAGGAGCUUAGCCAACUUUGUGCAAAUCC-AGCCAGAUUUAUUGGUAAGACACACACUACUCACAAUA .......(((((((((((...))))))).(((((.((((.((......-.))))))....)))))..............)))).... ( -20.50, z-score = -2.48, R) >consensus UUCCCAAGUGAAAGCUCCCAAGGAGCUUAGCCAACUUUGUGCAAAUCC_AGCUAGAUUUAUUGGUAAGACACACACUGCUUACAAUA ......((((.(((((((...))))))).(((((.((((.((........))))))....)))))........)))).......... (-18.72 = -18.32 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:58 2011