Locus 14891

Sequence ID dm3.chrX
Location 16,085,259 – 16,085,375
Length 116
Max. P 0.999593
window20513 window20514

overview

Window 3

Location 16,085,259 – 16,085,375
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 80.68
Shannon entropy 0.32243
G+C content 0.42032
Mean single sequence MFE -32.94
Consensus MFE -22.66
Energy contribution -22.82
Covariance contribution 0.16
Combinations/Pair 1.08
Mean z-score -4.01
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.78
SVM RNA-class probability 0.999310
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16085259 116 + 22422827
CUUAGUAUUACUUCUAGUCCAAAACAUGGACAAAUAAUAGCUCUGCCCGACCAUUGGAACAUUUGAUAAGGUACUUAUGAAAUGUACCAAUGAGCCAGCAGUGCUAUUAUAUAUAA
................(((((.....)))))..((((((((.((((..(..((((((.((((((.(((((...))))).)))))).))))))..)..)))).))))))))...... ( -40.70, z-score =  -6.73, R)
>droEre2.scaffold_4690 7754993 103 - 18748788
CUCAGUACUACUCCAUCUCCAGAACAUGAACUAA-AGCAGCUCUGCCAGACCAUUGGACCCUUUGAUAAGGUACUUAUGAAAGGUACCAAUGGGCCCGCAGUGC------------
.(((((.((...........)).)).))).....-....((.((((....(((((((..(((((.(((((...))))).)))))..)))))))....)))).))------------ ( -29.70, z-score =  -1.95, R)
>droYak2.chrX 10233180 102 + 21770863
CUCAAUAUUACUCCUAUUCCAAAACAAGGACUAA-GACAGCUCUGCCGGACCAUUGGAACCUG-GAUAAGGCACUUAUGAAAGGUACCAAUGAGCCCGCAGUGC------------
.......(((.((((...........)))).)))-....((.((((.((..((((((.((((.-.(((((...)))))...)))).))))))..)).)))).))------------ ( -30.50, z-score =  -3.00, R)
>droSec1.super_47 142571 104 + 216421
CUUAGGAUUACUUCUAUUCCAAGACAUGGACAAGUAAUAGCUCUGCCCGACCAUUGGAACAUUUCAUAAGGUACUUAUGAAAUGUACCAAUGUGCCAGCAGUGC------------
......(((((((....((((.....)))).))))))).((.((((..(..((((((.((((((((((((...)))))))))))).))))))..)..)))).))------------ ( -36.90, z-score =  -5.10, R)
>droSim1.chrX 12424798 103 + 17042790
UUUAGAAUUACUUCUAU-CCAAAACAUGGACCAGUAAUAGCUUUGCCCGACCAUUGGAACAUUUCAUAAGGUACUUAUGAAAUGUACAAAUGAGCCAGCAGUGC------------
......((((((....(-(((.....))))..)))))).((.((((..(..((((.(.((((((((((((...)))))))))))).).))))..)..)))).))------------ ( -26.90, z-score =  -3.28, R)
>consensus
CUUAGUAUUACUUCUAUUCCAAAACAUGGACAAAUAAUAGCUCUGCCCGACCAUUGGAACAUUUGAUAAGGUACUUAUGAAAUGUACCAAUGAGCCAGCAGUGC____________
.......................................((.((((..(..((((((.((((((.(((((...))))).)))))).))))))..)..)))).))............ (-22.66 = -22.82 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 16,085,259 – 16,085,375
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 80.68
Shannon entropy 0.32243
G+C content 0.42032
Mean single sequence MFE -39.36
Consensus MFE -30.58
Energy contribution -30.62
Covariance contribution 0.04
Combinations/Pair 1.19
Mean z-score -4.60
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 4.06
SVM RNA-class probability 0.999593
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 16085259 116 - 22422827
UUAUAUAUAAUAGCACUGCUGGCUCAUUGGUACAUUUCAUAAGUACCUUAUCAAAUGUUCCAAUGGUCGGGCAGAGCUAUUAUUUGUCCAUGUUUUGGACUAGAAGUAAUACUAAG
......((((((((.(((((.(..((((((.((((((.(((((...))))).)))))).))))))..).))))).))))))))..(((((.....)))))................ ( -42.10, z-score =  -6.01, R)
>droEre2.scaffold_4690 7754993 103 + 18748788
------------GCACUGCGGGCCCAUUGGUACCUUUCAUAAGUACCUUAUCAAAGGGUCCAAUGGUCUGGCAGAGCUGCU-UUAGUUCAUGUUCUGGAGAUGGAGUAGUACUGAG
------------...((((.((.(((((((..(((((.(((((...))))).)))))..))))))).)).)))).((((((-(((.((((.....))))..)))))))))...... ( -40.40, z-score =  -3.22, R)
>droYak2.chrX 10233180 102 - 21770863
------------GCACUGCGGGCUCAUUGGUACCUUUCAUAAGUGCCUUAUC-CAGGUUCCAAUGGUCCGGCAGAGCUGUC-UUAGUCCUUGUUUUGGAAUAGGAGUAAUAUUGAG
------------((.((((((((.((((((.((((...(((((...))))).-.)))).)))))))))).)))).))..((-(((.(((.......))).)))))........... ( -36.20, z-score =  -2.95, R)
>droSec1.super_47 142571 104 - 216421
------------GCACUGCUGGCACAUUGGUACAUUUCAUAAGUACCUUAUGAAAUGUUCCAAUGGUCGGGCAGAGCUAUUACUUGUCCAUGUCUUGGAAUAGAAGUAAUCCUAAG
------------((.((((((((.((((((.((((((((((((...)))))))))))).))))))))).))))).)).(((((((.((((.....))))....)))))))...... ( -42.80, z-score =  -6.16, R)
>droSim1.chrX 12424798 103 - 17042790
------------GCACUGCUGGCUCAUUUGUACAUUUCAUAAGUACCUUAUGAAAUGUUCCAAUGGUCGGGCAAAGCUAUUACUGGUCCAUGUUUUGG-AUAGAAGUAAUUCUAAA
------------((..((((.(..((((.(.((((((((((((...)))))))))))).).))))..).))))..)).((((((.(((((.....)))-))...))))))...... ( -35.30, z-score =  -4.67, R)
>consensus
____________GCACUGCUGGCUCAUUGGUACAUUUCAUAAGUACCUUAUCAAAUGUUCCAAUGGUCGGGCAGAGCUAUUAUUAGUCCAUGUUUUGGAAUAGAAGUAAUACUAAG
............((.((((((((.((((((.((((((.(((((...))))).)))))).)))))))))).)))).)).((((((..((((.....)))).....))))))...... (-30.58 = -30.62 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:55 2011