| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,084,114 – 16,084,189 |
| Length | 75 |
| Max. P | 0.633116 |
| Location | 16,084,114 – 16,084,189 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 68.25 |
| Shannon entropy | 0.60901 |
| G+C content | 0.49362 |
| Mean single sequence MFE | -14.27 |
| Consensus MFE | -7.24 |
| Energy contribution | -7.47 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16084114 75 + 22422827 UCCGAGGCUAUAUGUAAGCAGCCCACCGUCACAAGGGUGACAACAUCAACAUGAAAA-GGGGCAAGGACUCACUCC ...((((((.......))).((((...(((((....)))))..(((....)))....-.)))).....)))..... ( -20.50, z-score = -1.45, R) >droEre2.scaffold_4690 7750834 67 - 18748788 UCCGAGGAUAUA----AGCAGCUCAGCGUCACAAGGGUGACAACAUCAACAUGAAAA-GGGGCAGGGACUUC---- (((..(......----..).((((...(((((....)))))..(((....)))....-.))))..)))....---- ( -12.50, z-score = -0.56, R) >droYak2.chrX 10232054 74 + 21770863 UCCGAGAAUAUACAUAAGCAGCUCACCGUCACAAGGGUGACAACAUCAACAUGAAAAAGGGGCAAGGACUCUCC-- (((..(......).......((((...(((((....)))))..(((....)))......))))..)))......-- ( -12.60, z-score = -0.29, R) >droSec1.super_47 141446 71 + 216421 UCCGAAGCUAUAUGUAAGCAGCCCACCGUCACAAGGGUGACAACAUCAACAUGAAAA-GGGGCAAAGACUCC---- ......(((.......))).((((...(((((....)))))..(((....)))....-.)))).........---- ( -17.00, z-score = -1.49, R) >droSim1.chrX_random 4137355 71 + 5698898 UCCGAGGCUAUAUGGAAGCAGCCCACCGUCACAAGGGUGACAACAUCAACAUGAAAA-GGGGCAAGGACUCC---- (((...(((.......))).((((...(((((....)))))..(((....)))....-.))))..)))....---- ( -19.80, z-score = -1.36, R) >droMoj3.scaffold_6308 3106626 61 + 3356042 --------------UAUGUAUCCAUCUAGUACAAGGGUGACAACAAUAACAAGCAACAGCAGCA-GCCCUCGCUUC --------------..(((((.......)))))((((((....)........((....))....-)))))...... ( -7.30, z-score = 0.68, R) >droGri2.scaffold_15203 4596890 62 + 11997470 ----------UAUCCAUUCAGUCAUUCGGUACAAGGGUGACAACAAUAACAAGCAACAGCAGC----CCUCGCUUC ----------..........(((((((.......)))))))...........((....))(((----....))).. ( -10.20, z-score = -1.33, R) >consensus UCCGAGGCUAUAUGUAAGCAGCCCACCGUCACAAGGGUGACAACAUCAACAUGAAAA_GGGGCAAGGACUCCC___ ....................((((....(((....((((....))))....))).....))))............. ( -7.24 = -7.47 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:54 2011