| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,068,501 – 16,068,566 |
| Length | 65 |
| Max. P | 0.793608 |
| Location | 16,068,501 – 16,068,566 |
|---|---|
| Length | 65 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 78.77 |
| Shannon entropy | 0.41510 |
| G+C content | 0.45246 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -9.69 |
| Energy contribution | -11.52 |
| Covariance contribution | 1.82 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16068501 65 + 22422827 AAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGUUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACU ..(..((((...(((((.((.(((((.(.((...)).)))))).))...)))))))))..).... ( -19.20, z-score = -2.39, R) >droSim1.chrX 12409821 65 + 17042790 AAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGAUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACU ..(..((((...(((((.((.(((((.(.((...)).)))))).))...)))))))))..).... ( -19.20, z-score = -1.95, R) >droSec1.super_47 126005 65 + 216421 AAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGAUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACU ..(..((((...(((((.((.(((((.(.((...)).)))))).))...)))))))))..).... ( -19.20, z-score = -1.95, R) >droYak2.chrX 10217227 65 + 21770863 AAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGACUCGUCUGGGAUUCCGUCUCCUAGAAUGAAACC ....(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))...... ( -18.90, z-score = -2.03, R) >droEre2.scaffold_4690 7736347 63 - 18748788 AAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGACUCGUCUGGGAUACCGUCUCCUAGGAUGACU-- .((((((((...(((((((..(((((.(.((...)).))))))...)).)))))))))).)))-- ( -17.90, z-score = -0.80, R) >droVir3.scaffold_12472 372805 57 - 763072 AACCACUGUAU------UGAUUCCCAAGCCGCUUUAGCCACAGUUUCAAUUCC--AGACACAACU .....(((.((------(((..(....((.......))....)..)))))..)--))........ ( -6.00, z-score = -1.21, R) >consensus AAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGAUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACU ....(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))...... ( -9.69 = -11.52 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:50 2011