| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,037,388 – 16,037,441 |
| Length | 53 |
| Max. P | 0.742040 |
| Location | 16,037,388 – 16,037,441 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 98.74 |
| Shannon entropy | 0.01733 |
| G+C content | 0.54717 |
| Mean single sequence MFE | -16.83 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.63 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16037388 53 - 22422827 AGCCAUGCCAGCGUAUAAUUGCAGAGCAGCCACCGCUGGACAGUGGUUCGAAA ((((((.((((((.....((((...))))....))))))...))))))..... ( -18.40, z-score = -2.13, R) >droYak2.chrX 10184940 53 - 21770863 AGCCAUGCCAGCGUAUAAUUGCAGAGCAGCCACCGCUGGACAGUGGUUCGAAA ((((((.((((((.....((((...))))....))))))...))))))..... ( -18.40, z-score = -2.13, R) >droEre2.scaffold_4690 7705520 53 + 18748788 AGCCAUGGCAGCGUAUAAUUGCAGAGCAGCCACCGCUGGACAGUGGUUCGAAA ((((((..(((((.....((((...))))....)))))....))))))..... ( -13.70, z-score = 0.18, R) >consensus AGCCAUGCCAGCGUAUAAUUGCAGAGCAGCCACCGCUGGACAGUGGUUCGAAA ((((((.((((((.....((((...))))....))))))...))))))..... (-16.30 = -16.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:43 2011