| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,036,999 – 16,037,075 |
| Length | 76 |
| Max. P | 0.996704 |
| Location | 16,036,999 – 16,037,075 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 97.36 |
| Shannon entropy | 0.04455 |
| G+C content | 0.55064 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -30.62 |
| Energy contribution | -30.30 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.97 |
| SVM RNA-class probability | 0.996704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16036999 76 + 22422827 GAUUGAACAUCUGGUGGCUUGCUGUGAGGUAGCGGAGGCGGCGGCCCAUUGGAUCACAGUGGGCCAUAUUUUGAUC (((..((......((.((((.((((......)))))))).))(((((((((.....)))))))))....))..))) ( -32.50, z-score = -3.33, R) >droSim1.chrX 12374755 76 + 17042790 GAUUGAACAUCUGGUGGCUUGCUGUGAGGUAGCGGAGGCGGCGGCCCAUUGGAUCACAGUGGGCUAUAUUUUGAUC (((..((......((.((((.((((......)))))))).))(((((((((.....)))))))))....))..))) ( -29.80, z-score = -2.91, R) >droSec1.super_47 94435 76 + 216421 GAUUGAACAUCUGGUGGCUUGCUGUGAGGUAGCGGAGGCGGCGGCCCAUUGGAUCACAGUGGGCUAUAUUUUGAUC (((..((......((.((((.((((......)))))))).))(((((((((.....)))))))))....))..))) ( -29.80, z-score = -2.91, R) >droYak2.chrX 10184551 74 + 21770863 GAUUGAACAUCUGGUGGCUUGCUGUGAGGUAGCGGAGGCGGCGGCCCAUUGGAUCACAGUGGGCUA--UUUUGAUC (((..((......((.((((.((((......)))))))).))(((((((((.....))))))))).--.))..))) ( -29.80, z-score = -2.95, R) >droEre2.scaffold_4690 7705154 74 - 18748788 GAUUGAACAUCUGGUGGCUUGCUGUGAGGUAGCGGAGGCGGCGGCCCAUUGGAUCACAGUGGGCUA--UUUCGAUC (((((((......((.((((.((((......)))))))).))(((((((((.....))))))))).--.))))))) ( -32.00, z-score = -3.39, R) >consensus GAUUGAACAUCUGGUGGCUUGCUGUGAGGUAGCGGAGGCGGCGGCCCAUUGGAUCACAGUGGGCUAUAUUUUGAUC (((((((......((.((((.((((......)))))))).))(((((((((.....)))))))))....))))))) (-30.62 = -30.30 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:42 2011