| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,036,673 – 16,036,766 |
| Length | 93 |
| Max. P | 0.939859 |
| Location | 16,036,673 – 16,036,766 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.31 |
| Shannon entropy | 0.17773 |
| G+C content | 0.52912 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16036673 93 + 22422827 UGGGGGGUAGGGGUGGUUGGGGCACAAAAAGCGGCAAGGAAACACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCAC ............(((((((..((.......((((...(....).))))....(((((((.(((.....))).))))))).)).)))).))).. ( -26.30, z-score = -2.02, R) >droSim1.chrX 12374457 77 + 17042790 ----------------UGGGGGGACAAAAAGCGGCAAGGAAACACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCAC ----------------...(....).....(((....(....)..(((....(((((((.(((.....))).))))))).)))...))).... ( -21.00, z-score = -2.02, R) >droSec1.super_47 94114 77 + 216421 ----------------UGGGGGGACAAAAAGCGGCAAGGAAACACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCAC ----------------...(....).....(((....(....)..(((....(((((((.(((.....))).))))))).)))...))).... ( -21.00, z-score = -2.02, R) >consensus ________________UGGGGGGACAAAAAGCGGCAAGGAAACACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCAC ...................(....).....(((....(....)..(((....(((((((.(((.....))).))))))).)))...))).... (-20.00 = -20.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:41 2011