Locus 1488

Sequence ID dm3.chr2L
Location 11,494,946 – 11,495,065
Length 119
Max. P 0.732590
window2031

overview

Window 1

Location 11,494,946 – 11,495,065
Length 119
Sequences 3
Columns 121
Reading direction forward
Mean pairwise identity 77.19
Shannon entropy 0.29598
G+C content 0.29632
Mean single sequence MFE -18.01
Consensus MFE -11.89
Energy contribution -11.57
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.732590
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 11494946 119 + 23011544
UUGCAGAUAUUAAUAUUAACCAAAUUCAUUACCGCUUACACUUAAGUUUACUUAUUUGAAUUAUAUUGGUUUUAUAUUUAAGAAUACCGCCGCUAAAGCUGCCCGAAA-AAUAUAUAUUU-
......((((((((((.(((((((((((.....(((((....))))).........)))))....))))))..)))))..........((.((....)).))......-)))))......- ( -13.14, z-score =   0.32, R)
>droSec1.super_3 6890024 101 + 7220098
-------------------UUAAAAUAAU-ACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCACGAAACUAUAUAUAUUUU
-------------------...((((((.-((((.........))))....))))))(((.(((((((((((((....))))))))..((.((....)).))..........))))).))) ( -18.80, z-score =  -2.75, R)
>droSim1.chr2L 11309223 99 + 22036055
-------------------UUGAAAUAAU-ACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCAACUA--UAUAUAUAGUUU
-------------------...((((((.-((((.........))))....))))))(((((((((((((((((....))))))))..((.((....)).)).....--...))))))))) ( -22.10, z-score =  -3.37, R)
>consensus
___________________UUAAAAUAAU_ACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCACGAAA_UAUAUAUAUUUU
............................................((((((......))))))....((((((((....))))))))..((.((....)).))................... (-11.89 = -11.57 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:53 2011