Locus 14879

Sequence ID	dm3.chrX
Location	16,031,262 – 16,031,359
Length	97
Max. P	0.500000

overview

Window 2

Location	16,031,262 – 16,031,359
Length	97
Sequences	12
Columns	98
Reading direction	forward
Mean pairwise identity	77.32
Shannon entropy	0.50784
G+C content	0.50848
Mean single sequence MFE	-27.15
Consensus MFE	-15.09
Energy contribution	-15.83
Covariance contribution	0.74
Combinations/Pair	1.14
Mean z-score	-0.98
Structure conservation index	0.56
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.02
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>dm3.chrX 16031262 97 + 22422827
GCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCU-UUACCGAUUGCUAGUCGGCAGGUAGCU
(((.((..(((((((((......)))))))))...))....)))..(((...(((((((((.....))).-....((((.....)))))))))).))) ( -28.60, z-score =  -1.00, R)
>droSim1.chrX 12369154 97 + 17042790
GCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCU-UUACCGAUUGCUAGUCGGCAGGUAGCU
(((.((..(((((((((......)))))))))...))....)))..(((...(((((((((.....))).-....((((.....)))))))))).))) ( -28.60, z-score =  -1.00, R)
>droSec1.super_47 88794 97 + 216421
GCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGACCCAACUUGCGCGUUCAUCGCU-UUACCGAUUGCUAGUCGGCAGGUAGCU
(((.((..(((((((((......)))))))))...))....)))........(((((((((.....))).-....((((.....)))))))))).... ( -27.20, z-score =  -1.30, R)
>droYak2.chrX 10179005 97 + 21770863
GCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCU-UUACCGAUUGCUAGUCGGCAGGUAGCU
(((.((..(((((((((......)))))))))...))....)))..(((...(((((((((.....))).-....((((.....)))))))))).))) ( -28.60, z-score =  -1.00, R)
>droEre2.scaffold_4690 7699515 97 - 18748788
GCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCU-UUACCGAUUGCUAGUCGGCAGGUAGCU
(((.((..(((((((((......)))))))))...))....)))..(((...(((((((((.....))).-....((((.....)))))))))).))) ( -28.60, z-score =  -1.00, R)
>droAna3.scaffold_13260 1806580 82 + 2125536
ACUUGUGGAAAGCAAUUCAAUGUAAUUGCUUUGUGACUUAUAGCCCGACCUAACUUGCGA---------U-GUGAAUAAUGCUAGUCGGCAG------
...(((.((.(((((((((.....(((((...((..................))..))))---------)-.)))))..))))..)).))).------ ( -15.27, z-score =   0.19, R)
>dp4.chrXL_group1e 9650169 98 + 12523060
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUCCAUCGUUCGUGGCCACAGUCGUGGGGCAGGUAGCC
(((((((.(((((((((......))))))))).)..((((((((..((((..((..(((.......)))..))))))...)))))))))))))).... ( -33.50, z-score =  -0.80, R)
>droPer1.super_22 1132381 98 - 1688296
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCCCGUCCAUCGUUCGUGGCCACAGUCGCGGGGCAGGUAGCC
((((((..(((((((((......)))))))))((((((..(((((((((.......)))((.....))...).))))).))))))...)))))).... ( -35.40, z-score =  -1.51, R)
>droWil1.scaffold_181096 6770053 75 - 12416693
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCAAAAGCAGCCAUCCAGCCAUC--UAGUCAGC---------------------
........(((((((((......))))))))).(((((.(((((.................))))).--.)))))..--------------------- ( -17.83, z-score =  -1.01, R)
>droVir3.scaffold_12472 324742 89 - 763072
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGUGCGCUCGCCGAUCGU-----CAGUCG----GCAGGUAGCC
((((((..(((((((((......))))))))).(((((.((((..((((...............)))).))))-----.)))))----)))))).... ( -27.96, z-score =  -0.85, R)
>droMoj3.scaffold_6308 3036178 89 + 3356042
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGUGCGCUCGCCGAUCGU-----CAGUCG----GCAGGUAGCC
((((((..(((((((((......))))))))).(((((.((((..((((...............)))).))))-----.)))))----)))))).... ( -27.96, z-score =  -0.85, R)
>droGri2.scaffold_15203 4521471 88 + 11997470
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGACCCAACUUCUGCGCUCGCCGAUCGU-----CAGUCG----GCAGGUAAC-
(((((((((((((((((......)))))))).........(((......)))...)))))....((((((...-----..))))----))))))...- ( -26.30, z-score =  -1.69, R)
>consensus
GCCUGUAGAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCU_GUACCGACUGCUAGUCGGCAGGUAGCU
((((((..(((((((((......)))))))))(((.....(((......))).....)))............................)))))).... (-15.09 = -15.83 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:38 2011