| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,030,761 – 16,030,855 |
| Length | 94 |
| Max. P | 0.680180 |
| Location | 16,030,761 – 16,030,855 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 63.98 |
| Shannon entropy | 0.59573 |
| G+C content | 0.31662 |
| Mean single sequence MFE | -18.81 |
| Consensus MFE | -5.46 |
| Energy contribution | -9.94 |
| Covariance contribution | 4.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16030761 94 - 22422827 UAUUGCUUAUUAAAUCACCAAGUUUAAUGGUUUUCCUCCCUGUGUAGUCUAAGAUCAUUAGAUUUGGUCAAAACCUAAGCUAUA---GUCUUCUUUC------------ (((.(((((.......((((((((((((((((((...(........)...)))))))))))))))))).......))))).)))---..........------------ ( -21.94, z-score = -3.77, R) >droSim1.chrX 12368646 87 - 17042790 UAUUGCUUAUUAAAUCAACAAGUUUAAUGUUUUUUCUUCCUGUAUAG-------UCAUUAGAUUUGGUCAAAGCCUUAGCAUUA---GUCUUCUUUC------------ ((.((((...........(((((((((((......(.....).....-------.)))))))))))...........)))).))---..........------------ ( -13.15, z-score = -1.62, R) >droSec1.super_47 88278 94 - 216421 UAUUGCUUAUUAAAUCAACAAGUCUAAUGGUUUUUCUCCCUGUAUAGUCUAAGAUCAUUAGAUUUGGUCAAAACUUUAGCAAUA---GUCUUCUUUC------------ (((((((...........((((((((((((((((.((........))...))))))))))))))))...........)))))))---..........------------ ( -24.05, z-score = -4.99, R) >droYak2.chrX 10178648 84 - 21770863 UAUUGCUUGUUAAA----------GAUUGGUUUUUCUCGCUGUGUAGCCUGAAAUCAUUAGAUUUGGGCAGAGGCUUAGCAAUA---GUCUGAUUUC------------ (((((((......(----------((........))).(((.....((((.(((((....)))))))))...)))..)))))))---..........------------ ( -17.60, z-score = 0.17, R) >dp4.chrXL_group1e 9649746 101 - 12523060 GUUUGAUUGGAAAAUU------CGUAUCAAAUUCUCAUUC-GUUUACCCUUAUACUUAUAUAUUUGGG-AAAACUUUGGGGAUAUAUGUAUUAGUUUGUGUAGUUUUUC ..(((((((((...))------)).)))))(((((((...-((((.(((..(((......)))..)))-.))))..))))))).((..((......))..))....... ( -17.30, z-score = -0.45, R) >consensus UAUUGCUUAUUAAAUCA_CAAGUUUAAUGGUUUUUCUCCCUGUAUAGCCUAAGAUCAUUAGAUUUGGUCAAAACCUUAGCAAUA___GUCUUCUUUC____________ (((((((...........((((((((((((((((................))))))))))))))))...........)))))))......................... ( -5.46 = -9.94 + 4.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:37 2011