| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,022,375 – 16,022,436 |
| Length | 61 |
| Max. P | 0.697279 |
| Location | 16,022,375 – 16,022,436 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 80.40 |
| Shannon entropy | 0.33293 |
| G+C content | 0.52221 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -13.53 |
| Energy contribution | -14.12 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16022375 61 + 22422827 ---ACCAUCCAGCCAAGUUG---GCACAGGCUAUUCAAGCC---AUCUCAUAGGCUUGGCCGUGGCAUUU------ ---.((((...(((.....)---))...(((....((((((---........))))))))))))).....------ ( -20.50, z-score = -2.04, R) >droSim1.chrX_random 4132493 61 + 5698898 ---ACCAUCCAGCCAAGUUG---GCACAGGCUAUUCAAGCC---AUCUCAUAGGCUUGGCCGUGGCAUUU------ ---.((((...(((.....)---))...(((....((((((---........))))))))))))).....------ ( -20.50, z-score = -2.04, R) >droSec1.super_47 80146 67 + 216421 ---ACCAUCCAGCCAAGUUG---GCACAGGCUAUUCAAGCC---AUCUCAUAGGCUUGGCCGUGGCAUUUUUUUUU ---.((((...(((.....)---))...(((....((((((---........)))))))))))))........... ( -20.50, z-score = -2.28, R) >droYak2.chrX 10169748 61 + 21770863 ---ACCAUCCAGCCAAGUUG---GCACAGGCUAUUCAAGCC---AUCUCAUAGGCUUGGCCGUGGCAUUU------ ---.((((...(((.....)---))...(((....((((((---........))))))))))))).....------ ( -20.50, z-score = -2.04, R) >droEre2.scaffold_4690 7690630 60 - 18748788 ---ACCAUUCAGCCAAGUUG---GCACAGGCUAUUCA-GCC---AUCUCAUAGGCUUGGCCGUGGCAUUU------ ---.((((...(((.....)---))...(((((...(-(((---........))))))))))))).....------ ( -20.00, z-score = -2.16, R) >dp4.chrXL_group1e 9641513 69 + 12523060 GGUAAGCUCUAAUCUGGUGGAGAGCGAGGAGCACUCAGGCUCUGAUCUC-UGGGCCUGGCCAUGGCAUUU------ (((..(((((..(((.....)))....)))))...(((((((.......-.)))))))))).........------ ( -24.00, z-score = -0.14, R) >consensus ___ACCAUCCAGCCAAGUUG___GCACAGGCUAUUCAAGCC___AUCUCAUAGGCUUGGCCGUGGCAUUU______ ....((((...((((((((.........((((.....))))...........)))))))).))))........... (-13.53 = -14.12 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:35 2011