| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,009,655 – 16,009,754 |
| Length | 99 |
| Max. P | 0.649667 |
| Location | 16,009,655 – 16,009,754 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 63.78 |
| Shannon entropy | 0.48150 |
| G+C content | 0.47306 |
| Mean single sequence MFE | -34.20 |
| Consensus MFE | -15.96 |
| Energy contribution | -17.97 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.649667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16009655 99 + 22422827 -------------UUUUAGUAGUUGGUGCAACAGCAGCAGCAUCAACGGCUGCUGCACUGCAGUAAUGCUAUUGACCGCCAGCAUUAAAUUACGAUUGGGAGUCGUGGCAGC -------------.((((((.(((((((.....((((((((.......))))))))...(((....))).......)))))))))))))(((((((.....))))))).... ( -37.10, z-score = -2.22, R) >droSec1.super_47 67673 99 + 216421 -------------UUUUAGUAGUUGGUGCAACAGCAGCAGCAGCAACGGCUGCUGCACUGCAGUAAUGCUAUUGACCGCCAGCAUUAAGUUACGAUUGGGAGUCGUGGCAGC -------------..(((((.((((((((((.((((((((((((....))))))))((....))..)))).)))..))))))))))))((((((((.....))))))))... ( -41.90, z-score = -3.06, R) >droPer1.super_22 584217 110 + 1688296 GUUGCAGUUGAAGCUCCAGCUUUUUUUUUUUUUUUUCUUUUGCUUUUUGCUCCUGCCU--CAGUAAUGCUAUUGACCGCUAGCAUUAAGUUACGAUCGAGAGCUGGCUUAGG ...((((..(((((....)))))..................((.....))..))))((--.(((...(((.((((.((.((((.....)))))).)))).)))..))).)). ( -23.60, z-score = 0.33, R) >consensus _____________UUUUAGUAGUUGGUGCAACAGCAGCAGCACCAACGGCUGCUGCACUGCAGUAAUGCUAUUGACCGCCAGCAUUAAGUUACGAUUGGGAGUCGUGGCAGC .................(((.((((.(((..........))).)))).)))(((((.......(((((((..........)))))))...((((((.....))))))))))) (-15.96 = -17.97 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:34 2011