| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,009,510 – 16,009,615 |
| Length | 105 |
| Max. P | 0.874748 |
| Location | 16,009,510 – 16,009,615 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Shannon entropy | 0.35931 |
| G+C content | 0.43159 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -16.80 |
| Energy contribution | -16.64 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16009510 105 - 22422827 ---CAACCGC-ACACACAC---AAA------AAAAAAGAAAAAGCUAAUCUGAUAAUACAGAAUUGAAAGGGGCGGUCACGGCACGAAUUUU-GCUACACGCUCUCGAUACGAUGGCAG ---.......-........---...------............((((.((((......))))(((((...(((((((...((((.......)-))))).))))))))))....)))).. ( -19.10, z-score = -1.15, R) >droEre2.scaffold_4690 7678331 90 + 18748788 ----------------------------CGCACACACAAAAAAGCUAAUCUGAUAAUACAGAAUUGAAAGGGGCGGUCACGGCACGAAUUUC-GCUACACGCUCUCGAUACGAUGGCAG ----------------------------...............((((.((((......))))(((((...(((((((..(((........))-)..)).))))))))))....)))).. ( -18.30, z-score = -1.05, R) >droYak2.chrX 10156948 108 - 21770863 ---CAACCGC-ACACACACACAAAA------AAGAAAAAAAAAGCUAAUCUGAUAAUACAGAAUUGAAAGGGGCGGUCACGGCACGAAUUUU-GCUACACGCUCUCGAUACGAUGGCAG ---.......-..............------............((((.((((......))))(((((...(((((((...((((.......)-))))).))))))))))....)))).. ( -19.10, z-score = -1.23, R) >droSec1.super_47 67519 114 - 216421 ---CAACCGC-ACACACAAAAAAAAAAAAACAAAAAACAAAAAGCUAAUCUGAUAAUACAGAAUUGAAAGGGGCGGUCACGGCACGAAUUUU-GCUACACGCUCUCGAUACGAUGGCAG ---.......-................................((((.((((......))))(((((...(((((((...((((.......)-))))).))))))))))....)))).. ( -19.10, z-score = -1.53, R) >droWil1.scaffold_181096 6734390 119 + 12416693 GCUAAGCCACAACAACAACAACAAAUGGCUUAUAAAAAAAAGAGCUAAUCUGAUAAUACAGAAUUGAAAGGGGCGGUCACGGCACGAAUUUUAGCUACACGCUCUUGAUACGUUGGCAA .....(((((...........(((.((((((..........)))))).((((......)))).)))..(((((((((...(((..........))))).))))))).....).)))).. ( -25.10, z-score = -1.73, R) >consensus ___CAACCGC_ACACACACA__AAA______AAAAAAAAAAAAGCUAAUCUGAUAAUACAGAAUUGAAAGGGGCGGUCACGGCACGAAUUUU_GCUACACGCUCUCGAUACGAUGGCAG ...........................................((((.((((......))))(((((...(((((((...(((..........))))).))))))))))....)))).. (-16.80 = -16.64 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:33 2011