| Sequence ID | dm3.chrX |
|---|---|
| Location | 16,001,993 – 16,002,053 |
| Length | 60 |
| Max. P | 0.516587 |
| Location | 16,001,993 – 16,002,053 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 83.97 |
| Shannon entropy | 0.26824 |
| G+C content | 0.36939 |
| Mean single sequence MFE | -7.84 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.52 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 16001993 60 + 22422827 AAAGUGCAAGAGCACA------AUUGUCUUGCUUUAAUUCCCCAACUAUAAACACACUUCCGAUAU .....((((((.((..------..)))))))).................................. ( -7.20, z-score = -1.39, R) >droEre2.scaffold_4690 7671339 60 - 18748788 AAAGUGCAGAUGCACA------AUCCUCUCGCUAUUAUUUCUCAACUAUAAACACACUUUUGAUAU ...((((....)))).------............................................ ( -5.80, z-score = -0.81, R) >droYak2.chrX 10149488 66 + 21770863 AAAGUGCAGAUGCACUUCAUCCAUCUUCUUGCUUUAAUUUCCCAACUAUAAACACACUUCCGAUAU .((((((....))))))................................................. ( -6.80, z-score = -1.68, R) >droSec1.super_47 60264 60 + 216421 AAAGUGCAAGAGCACA------AGCUUCUUGCUUUAAUUCCGCAACUAUAAACACACUUCCGAUAU .....((((((((...------.)).)))))).................................. ( -9.70, z-score = -1.60, R) >droSim1.chrX 12343929 60 + 17042790 AAAGUGCAAGAGCACA------AGCUUCUUGCUUUAAUUCCCCAACCAUAAACACACUUCCGAUAU .....((((((((...------.)).)))))).................................. ( -9.70, z-score = -2.85, R) >consensus AAAGUGCAAGAGCACA______AUCUUCUUGCUUUAAUUCCCCAACUAUAAACACACUUCCGAUAU ...((((....))))................................................... ( -5.52 = -5.52 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:32 2011