| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,990,365 – 15,990,420 |
| Length | 55 |
| Max. P | 0.997814 |
| Location | 15,990,365 – 15,990,420 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 91.30 |
| Shannon entropy | 0.11687 |
| G+C content | 0.35045 |
| Mean single sequence MFE | -13.93 |
| Consensus MFE | -13.86 |
| Energy contribution | -13.20 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.18 |
| SVM RNA-class probability | 0.997814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15990365 55 - 22422827 AAGAUAGCCAUUUACGUAUACACCUACAUAUGUAUGUAUAUGGAUUUCAAGGUCG ..((...((((.((((((((..........)))))))).))))...))....... ( -12.00, z-score = -1.77, R) >droSec1.super_47 48471 51 - 216421 AAGAUAGCCAUUUACGUAUGC----ACAUACAUAUGUAUAUGGAUUUCAAGGUCG ..((...((((.((((((((.----.....)))))))).))))...))....... ( -14.90, z-score = -3.83, R) >droSim1.chrX_random 4124513 51 - 5698898 AAGAUAGCCAUUUACGUAUGC----ACAUACAUAUGUAUAUGGAUUUCAAGGUCG ..((...((((.((((((((.----.....)))))))).))))...))....... ( -14.90, z-score = -3.83, R) >consensus AAGAUAGCCAUUUACGUAUGC____ACAUACAUAUGUAUAUGGAUUUCAAGGUCG ..((...((((.((((((((..........)))))))).))))...))....... (-13.86 = -13.20 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:27 2011