| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,988,373 – 15,988,474 |
| Length | 101 |
| Max. P | 0.764717 |
| Location | 15,988,373 – 15,988,474 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 68.72 |
| Shannon entropy | 0.49140 |
| G+C content | 0.47644 |
| Mean single sequence MFE | -27.99 |
| Consensus MFE | -11.81 |
| Energy contribution | -10.50 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15988373 101 + 22422827 ------GACUGAUCGUAGCAUCUAGUUUUACCCUUCUCCCGUGAGUGAUCAUCUGUACGGCUG-CGGCG-AUCG-UGAUCUUCAUUCCGAUACCGCUGCUUUCUGUCGUU ------(((.((..(((((...((((..(((.....((.(....).))......)))..))))-.((..-((((-.((.......)))))).)))))))..)).)))... ( -25.80, z-score = -0.75, R) >droWil1.scaffold_181096 1218238 110 + 12416693 UCAUCAUGUUCCUUGUAAAACUUUUUCUUAUAACGUUCCUUGGAGUCGUUUUCUUUCGAGUUGGCAGCGUAUCGCUGCUUUUUAUAGAACUUUGAUUGUUGUUCCUCCCG ..((((.((((..((((((((((........(((((((....))).)))).......)))))(((((((...)))))))..)))))))))..)))).............. ( -23.16, z-score = -2.46, R) >droSim1.chrX_random 4122445 101 + 5698898 ------GACUGAUCGUAGCAUUUAGUUUUACCAUGCUCCCGUGAGUGAUCAUCUGUACGGCUG-CGGCG-AUCG-UGAUCUUCAUUCCGUCGCCGCUGCUUUCUUUCGUU ------((..((..(((((...((((..(((.(((.((.(....).)).)))..)))..))))-.((((-(.((-.((.......))))))))))))))..))..))... ( -31.60, z-score = -2.28, R) >droSec1.super_47 46456 101 + 216421 ------GACUGAUCGUAGCAUUUAGUUUUACCUUGCUCCCGUGAGUGAUCAUCUGUACGGCUG-CGGCG-AUCG-UGAUCUUCAUUCCGUCGCCGCUGCUUUCUUUCGUU ------((..((..(((((...............((..(((((...(.....)..)))))..)-)((((-(.((-.((.......))))))))))))))..))..))... ( -31.40, z-score = -2.42, R) >consensus ______GACUGAUCGUAGCAUUUAGUUUUACCAUGCUCCCGUGAGUGAUCAUCUGUACGGCUG_CGGCG_AUCG_UGAUCUUCAUUCCGUCGCCGCUGCUUUCUUUCGUU ..............(((((...................(((((((.......)).))))).....((((......((.....))......)))))))))........... (-11.81 = -10.50 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:26 2011