| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,986,631 – 15,986,751 |
| Length | 120 |
| Max. P | 0.510569 |
| Location | 15,986,631 – 15,986,751 |
|---|---|
| Length | 120 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.87 |
| Shannon entropy | 0.56657 |
| G+C content | 0.53106 |
| Mean single sequence MFE | -32.33 |
| Consensus MFE | -11.62 |
| Energy contribution | -14.83 |
| Covariance contribution | 3.21 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15986631 120 + 22422827 GCGUGUGUUGGUUGUGCUCGUAGUAAAAUCGAGCCUAGAAGGGCUUGCGCAAUGAGUGCAUAUCCUUCCGUGGCACAGUUUUAGUACAGCCCCCCCCCUCCUCCUCCUCUUCCACCACUC ....(((.(((....(((.(((.((((((.(.(((..((((((..(((((.....)))))..))))))...))).).)))))).)))))).....................))).))).. ( -34.81, z-score = -2.26, R) >droEre2.scaffold_4690 7656771 102 - 18748788 GCGUGUGUUUAUUGCGCUCGUAGUAAAAUCGAGCCUAGAAGGGCUUGCGCAAUGAGUGCAUAUCCUUGCGUGGCACAGUUUUAGUACAGAUCCCCGCCUCUC------------------ (((.((((.....))))..(((.((((((.(.(((..((((((..(((((.....)))))..))))).)..))).).)))))).))).......))).....------------------ ( -31.20, z-score = -1.11, R) >droYak2.chrX 10134770 102 + 21770863 GCGAGUGUUGGUUGUGCUUGUAGUAAAAUCGAGCCAAGAAGGACUUGCGCAAUGAGUGCAUAUCCUUCCGUGGCACACUUUUAGUACACAUGCCCGCCUCUC------------------ ..(((.((.(((.(((..((((.(((((..(.((((.((((((..(((((.....)))))..))))))..)))).)..))))).)))))))))).)))))..------------------ ( -37.70, z-score = -3.44, R) >droSec1.super_47 44809 109 + 216421 GUGUGUGUUGGUUGUGCUCGUAGUAAAAUCGAGCCUAGAAGGGCUUGCGCAAUGAGUGCAUAUCCUUCCGUGGCACAGUUUUAGUACAGCUCCCCCCUCCCCUCCUCUC----------- .........((..(.(((.(((.((((((.(.(((..((((((..(((((.....)))))..))))))...))).).)))))).)))))).)..)).............----------- ( -33.50, z-score = -2.56, R) >droSim1.chrX_random 4120781 109 + 5698898 GCGUGUGUUGGUUGUGCUCGUAGUAAAAUCGAGCCUAGAAGGGCUUGCGCAAUGAGUGCAUAUCCUUCCGUGGCACAGUUUUAGUACAGCUCCCCCCUCCCCUCCUCUC----------- .........((..(.(((.(((.((((((.(.(((..((((((..(((((.....)))))..))))))...))).).)))))).)))))).)..)).............----------- ( -33.50, z-score = -2.28, R) >dp4.chrXL_group1e 9586971 95 + 12523060 GUGCGCACUGUGUGUAUUCGUAGUAAAAA------UAAAAGAGCUAGGACAACGCG---AAAGCCC-----GGCAAGAGGUUUGUGCGGGUCCUCGGUCUUCGGUCCGC----------- ((((((.....))))))............------..........(((((..((((---.((((((-----.....).))))).)))).)))))(((.(....).))).----------- ( -27.70, z-score = -0.13, R) >droPer1.super_22 1066033 95 - 1688296 GUGCGCGCUGUGUGUAUUCGUAGUAAAAA------UAAAAGAGCUAGGACAACGCG---AAAGCCC-----GGCAAGAGGUUUGUGCGGGUCCUCGGUCUUCGGUCCGC----------- ..(((.(((((((.(((.....)))...)------)).((((.(.(((((..((((---.((((((-----.....).))))).)))).))))).).)))))))).)))----------- ( -27.90, z-score = 0.18, R) >consensus GCGUGUGUUGGUUGUGCUCGUAGUAAAAUCGAGCCUAGAAGGGCUUGCGCAAUGAGUGCAUAUCCUUCCGUGGCACAGUUUUAGUACAGCUCCCCGCUCCUC_CUCCUC___________ (((((.......)))))..(((.(((((..(.(((...(((((..(((((.....)))))..)))))....))).)..))))).)))................................. (-11.62 = -14.83 + 3.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:24 2011