Locus 14866

Sequence ID	dm3.chrX
Location	15,984,811 – 15,984,901
Length	90
Max. P	0.637867

overview

Window 4

Location	15,984,811 – 15,984,901
Length	90
Sequences	4
Columns	90
Reading direction	forward
Mean pairwise identity	88.05
Shannon entropy	0.18521
G+C content	0.47835
Mean single sequence MFE	-22.40
Consensus MFE	-17.45
Energy contribution	-18.57
Covariance contribution	1.12
Combinations/Pair	1.19
Mean z-score	-1.81
Structure conservation index	0.78
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.31
SVM RNA-class probability	0.637867
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15984811 90 + 22422827
UCUACCCAAAUUUAUUGAAGAACAGCUGUCCCUUUCGGCGCUGAAAAGCCCAGUGCUCUAGUGAGCGCCAUAACUAACGACAACAAAACA
........................(.((((......((.(((....))))).((((((....))))))..........)))).)...... ( -20.80, z-score =  -2.32, R)
>droSec1.super_47 43112 83 + 216421
---ACCCAAAAUUAGUGAAGAACAGCUGUCUCUUUCGGCGCUGAAAAGCUUAGUGCUCUAGUGAGCGCCGUAAC----GACAACAAAACA
---.....................(.((((.....(((((((....))).....((((....))))))))....----)))).)...... ( -22.10, z-score =  -1.48, R)
>droYak2.chrX 10133329 83 + 21770863
---ACCCAGUGUUGGUGGAGAACAGCUGUCCCUUUCGGCGCUGAAAAGCCCAGUGCUCUAGUGAGCACCAUAAC----GACAACAAAACA
---......(((((.(((......((((.......))))(((....))))))((((((....))))))......----..)))))..... ( -25.60, z-score =  -1.66, R)
>droEre2.scaffold_4690 7655127 83 - 18748788
---ACCCAAUGUUGGUGAAGAACAGCUGUCCCUUUCGGCGCUGAAAAGCCCAAUGCUCUAGUGAGCACCAUAAC----GACAACAAAACA
---.......((((........))))((((......((.(((....)))))..(((((....))))).......----))))........ ( -21.10, z-score =  -1.79, R)
>consensus
___ACCCAAAGUUAGUGAAGAACAGCUGUCCCUUUCGGCGCUGAAAAGCCCAGUGCUCUAGUGAGCACCAUAAC____GACAACAAAACA
........................(.((((......((.(((....))))).((((((....))))))..........)))).)...... (-17.45 = -18.57 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:23 2011