| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,980,494 – 15,980,567 |
| Length | 73 |
| Max. P | 0.952344 |
| Location | 15,980,494 – 15,980,567 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 70.41 |
| Shannon entropy | 0.57930 |
| G+C content | 0.44479 |
| Mean single sequence MFE | -21.85 |
| Consensus MFE | -8.86 |
| Energy contribution | -11.08 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15980494 73 + 22422827 AGUAGAAGAGAAAGCCAUUUCUCUUUUCUUUCUCUGAUUUUCACUCACUUUUCUCCAGAGUGAGUGGGUCUCA ((.((((((((((....))))))))))))......((..((((((((((((.....))))))))))))..)). ( -25.70, z-score = -3.34, R) >droSim1.chrX_random 4114198 73 + 5698898 AAUAGAAGAGAAAGCAAUUUCUCUUUUCUUUCUCUGAUUUUCACUCACUUUUCUCCAGAGUGAGUGGGUCCCA ...((((((((((....))))))))))............((((((((((((.....))))))))))))..... ( -24.30, z-score = -3.35, R) >droSec1.super_47 38582 73 + 216421 AGUAGAAGAGAAAGCAAUUUCUCUUGUCUUUCUCUGAUUCUCACUCACUUUUCUCCAGAGUGAGUGGGUCCUA ......(((((((((((......))).))))))))....((((((((((((.....))))))))))))..... ( -26.80, z-score = -3.28, R) >droYak2.chrX 10128983 73 + 21770863 AUUAGAAGAGCAAGCGAAUUCUCUUUUCUUUCUCUGAUUUCCACUCACGUUUCUCCAGAGUGAGUGGCUCCCA ((((((((((.(((.(....).)))))))...))))))..((((((((...........))))))))...... ( -17.90, z-score = -1.30, R) >droEre2.scaffold_4690 7650888 61 - 18748788 -----------AGUAGAAUUAUCUUUU-UUUCUCUGAUUUUCACUCACUUUUCUCCAGAGUGCGUGGGUCCCA -----------((.((((..(....).-.))))))....(((((.((((((.....)))))).)))))..... ( -10.40, z-score = -0.81, R) >dp4.chrXL_group1e 9580511 62 + 12523060 AGCCGAAGAGAGGGACAGAGCU-UGGGCUAGCUCUGGCUCUUGCUCUCGCGCC----GAGCAACGGG------ ..(((....(((((.(((((((-......))))))).)))))((((.......----))))..))).------ ( -26.00, z-score = -0.52, R) >consensus AGUAGAAGAGAAAGCAAUUUCUCUUUUCUUUCUCUGAUUUUCACUCACUUUUCUCCAGAGUGAGUGGGUCCCA ......((((.(((.((.......)).))).))))....((((((((((((.....))))))))))))..... ( -8.86 = -11.08 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:22 2011