Locus 14863

Sequence ID dm3.chrX
Location 15,980,249 – 15,980,367
Length 118
Max. P 0.809184
window20471

overview

Window 1

Location 15,980,249 – 15,980,367
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 76.46
Shannon entropy 0.38318
G+C content 0.41361
Mean single sequence MFE -26.62
Consensus MFE -19.04
Energy contribution -19.35
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.76
SVM RNA-class probability 0.809184
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 15980249 118 + 22422827
AAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAGGCAAUACACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCUGCUUAGACGGUGCCUCAACAAGGAUUCUAUAUGCAAAUAUG
.....((((((...((((((.....(((....)))....((((.(......).))))..)))))).))))))....(((.((((.....(((.....)))..))))...)))...... ( -29.30, z-score =  -1.11, R)
>droEre2.scaffold_4690 7650670 93 - 18748788
AAACAUCGGCAAAAGCAGAUGAUAAGCCCUGAAGCAAUACACUGCGAAAAACGAGUGCAAUUUGUGUGCUAACAUCGGCUUA-ACCUUAAGCCU------------------------
.......((((...((((((.....((......))....((((.((.....))))))..)))))).))))......((((((-....)))))).------------------------ ( -21.60, z-score =  -1.13, R)
>droSec1.super_47 38347 110 + 216421
AAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAAGCUAUGCACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCGGCUUAGAUUCCAAGUCUAACCUACAUAGAUCUU--------
...((((.((....)).))))...(((((..((....((((((.(......).)))))).))..)).)))......((.((((((.....))))))))............-------- ( -29.60, z-score =  -2.10, R)
>droSim1.chrX_random 4113962 110 + 5698898
AAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAAGCUAUACACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCGGCUUAGAUUCCAAGUCUAACCUACAUAGAUCUU--------
...((((.((....)).)))).(((((((...(((((((((((.(......).)))).....)))).))).....)))))))........(((((.......)))))...-------- ( -26.00, z-score =  -1.37, R)
>consensus
AAACAUUGGCGAAAGCAGAUGAUAAGCCGUGAAGCAAUACACUGGAAAAAACGAGUGCAAUUUGUGUGCUAACUUCGGCUUAGACUCCAAGUCUAACCUACAUAGAUCUU________
...((((.((....)).)))).(((((((((........)))...........((..((.....))..))......)))))).................................... (-19.04 = -19.35 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:21 2011