| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,980,104 – 15,980,215 |
| Length | 111 |
| Max. P | 0.660846 |
| Location | 15,980,104 – 15,980,215 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.20 |
| Shannon entropy | 0.19070 |
| G+C content | 0.53590 |
| Mean single sequence MFE | -35.55 |
| Consensus MFE | -28.82 |
| Energy contribution | -28.39 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15980104 111 + 22422827 GAGCGGGAGAGUAAGACCACGUUCUAAUCCG-CUCUCCACGCUCCACGCUCUACGCAGCUGAUCCGAGGACACACGAAGCGCAUUUCUUGGCCUUCGGAUGUGGAAUCAUUG ((((((((((((.(((......))).....)-)))))).)))((((((((......)))..((((((((.(.((.((((....)))).))).))))))))))))).)).... ( -38.10, z-score = -1.91, R) >droYak2.chrX 10128659 112 + 21770863 GAGUGGAAGAGUAAGACAAUAUUCUAAACGCUCUCCACGCUCUCCACGCUUUACGCAGCUGGUCCGAGGACACACGAAGCGCAGUUCUUGGCCUUCGGAUGUGGAAUCCUUG (((((..((((((......))))))...)))))((((((...(((..(((......))).((.((((((((............))))))))))...)))))))))....... ( -34.80, z-score = -1.12, R) >droSec1.super_47 38210 103 + 216421 GAGUGGGAGAGCAAGACCAUGUUCUAAAC---------GCUCUCCACGCUCUACGCAGCUGAUCCGAGGACACACGAAGCGCAUUUCUUGGCCUUCGGAUGUGGAAUCAUUG (((((..((((((......))))))...)---------))))((((((((......)))..((((((((.(.((.((((....)))).))).)))))))))))))....... ( -36.00, z-score = -2.21, R) >droSim1.chrX_random 4113825 103 + 5698898 GAGUGGGAGAGUAAGACCAUGUUCUAAAC---------GCUCUCCACGCUCUACGCAGCUGAUCCGAGGACACACGAAGCGCAUUUCUUGGCCUUCGGAUGUGGAAUCAUUG ((((((((((((.(((......)))....---------))))))).)))))....(((.((((((....(((..(((((.((........)))))))..))))).))))))) ( -33.30, z-score = -1.47, R) >consensus GAGUGGGAGAGUAAGACCAUGUUCUAAAC_________GCUCUCCACGCUCUACGCAGCUGAUCCGAGGACACACGAAGCGCAUUUCUUGGCCUUCGGAUGUGGAAUCAUUG ((((((((((((..........................))))))).)))))..((((.((((.(((((((..............)))))))...)))).))))......... (-28.82 = -28.39 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:20 2011