| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,972,172 – 15,972,224 |
| Length | 52 |
| Max. P | 0.695936 |
| Location | 15,972,172 – 15,972,224 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 98.72 |
| Shannon entropy | 0.01766 |
| G+C content | 0.29487 |
| Mean single sequence MFE | -7.85 |
| Consensus MFE | -7.33 |
| Energy contribution | -7.67 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15972172 52 - 22422827 ACUUCAUCGAAAUAAAAUCCUAUGCCAGAUAGAAUGUACCAUAAUAGGAUAU ................(((((((....................))))))).. ( -5.95, z-score = -0.73, R) >droSec1.super_47 30378 52 - 216421 ACUUCAUCGAAAUAAAAUCCUAUGCCAGAUAGAAUGUACUAUAAUAGGAUAU ................(((((((.....((((......)))).))))))).. ( -8.80, z-score = -2.01, R) >droSim1.chrX 12332656 52 - 17042790 ACUUCAUCGAAAUAAAAUCCUAUGCCAGAUAGAAUGUACUAUAAUAGGAUAU ................(((((((.....((((......)))).))))))).. ( -8.80, z-score = -2.01, R) >consensus ACUUCAUCGAAAUAAAAUCCUAUGCCAGAUAGAAUGUACUAUAAUAGGAUAU ................(((((((.....((((......)))).))))))).. ( -7.33 = -7.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:19 2011