| Sequence ID | dm3.chrX |
|---|---|
| Location | 15,953,717 – 15,953,805 |
| Length | 88 |
| Max. P | 0.800307 |
| Location | 15,953,717 – 15,953,805 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 76.93 |
| Shannon entropy | 0.41228 |
| G+C content | 0.37500 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -11.08 |
| Energy contribution | -13.92 |
| Covariance contribution | 2.84 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 15953717 88 - 22422827 AAAAUGUAGGAAUUAUACUUGUUUGUUCCUUAGACAAAAAUUCGACAGUUGUAGAGUACUUUGAAGUGUGCUCUGUACUUGUUUGGUU ....(((((((((...........))))))...)))..(((..(((((.((((((((((........)))))))))).)))))..))) ( -20.00, z-score = -1.69, R) >droSim1.chrX 12314396 88 - 17042790 AAAAUGUAGAGGUUUUAUUUGUGGGUUCCUCAGACAAAAAUCCGACAGUUGUAGAGUACUUGAAAGUGUGCUCUGCACUUGUUUGGUU ....(((.((((..((.......))..))))..)))..((((.(((((.((((((((((........)))))))))).))))).)))) ( -26.80, z-score = -2.98, R) >droSec1.super_47 6696 88 - 216421 AAAAUGUAGAGGUUUUAUUUGUGGGUUCCUCAGACAAAAAUCCGACAGUUGUAGAGUACUUGAAAGUGUGCUCUGCACUUGUUUGGUU ....(((.((((..((.......))..))))..)))..((((.(((((.((((((((((........)))))))))).))))).)))) ( -26.80, z-score = -2.98, R) >droYak2.chrX 10102356 66 - 21770863 AAAAUGUAAGGGUU---UUUGUGGGUUCCUUCGACAAAAAUCCAGCGGUUGUGGAGUACUUCGUAAUGU------------------- .........(((((---(((((.((.....)).))))))))))....((((((((....))))))))..------------------- ( -16.40, z-score = -1.81, R) >droEre2.scaffold_4690 7624271 88 + 18748788 CAAAUGUAAGGGUUUUAUUUGAGGGUUCCUUAGACAAAAAUUCAACGGUUGUAUAGUACUUGGUAGUGUGUUCAGCACUUGUUUGGUU (((((....(((((((.(((((((...)))))))..)))))))....((((.(((.((((....))))))).))))....)))))... ( -17.00, z-score = -0.42, R) >consensus AAAAUGUAGGGGUUUUAUUUGUGGGUUCCUUAGACAAAAAUCCGACAGUUGUAGAGUACUUGGAAGUGUGCUCUGCACUUGUUUGGUU ....(((.((((...............))))..)))..((((.(((((.((((((((((........)))))))))).))))).)))) (-11.08 = -13.92 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:48:14 2011